Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 2.3e-84 315.5 153 100.0
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 9.4e-54 213.8 147 70.1
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.2e-53 213.4 146 71.9
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.2e-53 213.4 146 71.9
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.4e-52 209.9 146 70.5
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 5.7e-51 204.5 147 68.7
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 2.2e-50 202.6 110 81.8
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 6.3e-50 201.1 153 65.4
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 8.3e-50 200.7 108 80.6
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 2.4e-49 199.1 110 80.0
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.1e-49 198.7 110 80.0
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 3.1e-49 198.7 108 82.4
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 2.0e-48 196.1 108 81.5
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.7e-48 195.7 108 81.5
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 4.5e-48 194.9 123 73.2
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 5.9e-48 194.5 121 72.7
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 7.7e-48 194.1 108 77.8
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 7.7e-48 194.1 108 80.6
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 1.0e-47 193.7 107 81.3
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.0e-47 193.7 107 81.3
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.0e-47 193.7 108 80.6
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.0e-47 193.7 108 80.6
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.0e-47 193.7 118 74.6
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.0e-47 193.7 108 81.5
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.0e-47 193.7 153 62.7
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.3e-47 193.4 108 76.9
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.3e-47 193.4 108 76.9
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 1.7e-47 193.0 145 64.8
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 2.2e-47 192.6 137 65.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 2.9e-47 192.2 138 66.7
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 2.9e-47 192.2 120 75.0
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 3.8e-47 191.8 108 77.8
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 3.8e-47 191.8 108 79.6
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 5.0e-47 191.4 108 80.6
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 5.0e-47 191.4 107 79.4
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 6.5e-47 191.0 107 80.4
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 6.5e-47 191.0 107 80.4
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 6.5e-47 191.0 107 80.4
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.5e-46 189.9 107 78.5
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.5e-46 189.9 131 71.0
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 1.9e-46 189.5 162 62.3
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 3.2e-46 188.7 108 78.7
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.2e-46 188.7 108 78.7
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.2e-46 188.7 108 78.7
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 3.2e-46 188.7 108 79.6
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 4.2e-46 188.3 107 79.4
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 4.2e-46 188.3 114 73.7
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 4.2e-46 188.3 108 80.6
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 4.2e-46 188.3 107 76.6
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 5.5e-46 188.0 107 79.4
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 7.2e-46 187.6 104 78.8
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 7.2e-46 187.6 113 73.5
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 7.2e-46 187.6 108 76.9
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 9.4e-46 187.2 107 78.5
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 9.4e-46 187.2 107 78.5
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 9.4e-46 187.2 108 75.9
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 9.4e-46 187.2 108 77.8
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 9.4e-46 187.2 136 67.6
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 9.4e-46 187.2 145 63.4
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.2e-45 186.8 108 75.0
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 1.2e-45 186.8 107 76.6
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.2e-45 186.8 107 77.6
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 1.2e-45 186.8 108 76.9
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.6e-45 186.4 108 76.9
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 2.1e-45 186.0 108 77.8
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 2.1e-45 186.0 129 68.2
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.7e-45 185.7 132 66.7
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 3.6e-45 185.3 108 77.8
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 6.1e-45 184.5 107 76.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.0e-44 183.7 106 78.3
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.8e-44 183.0 106 78.3
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.8e-44 183.0 106 78.3
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 3.0e-44 182.2 119 70.6
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 3.0e-44 182.2 109 70.6
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 3.0e-44 182.2 106 74.5
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 3.0e-44 182.2 135 63.7
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 4.0e-44 181.8 142 62.7
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 5.2e-44 181.4 108 75.9
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.2e-43 180.3 197 51.3
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 2.6e-43 179.1 112 71.4
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.4e-43 178.7 110 73.6
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 4.4e-43 178.3 153 58.2
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 2.2e-42 176.0 135 62.2
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 2.8e-42 175.6 144 58.3
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 3.7e-42 175.3 129 62.8
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 4.9e-42 174.9 131 64.1
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 6.3e-42 174.5 110 71.8
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 6.3e-42 174.5 153 56.9
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 1.4e-41 173.3 116 69.8
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 5.4e-41 171.4 152 56.6
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 1.6e-40 169.9 101 77.2
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 2.0e-40 169.5 136 63.2
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.5e-40 168.7 115 65.2
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 3.5e-40 168.7 156 53.8
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 1.3e-39 166.8 161 54.0
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.7e-39 166.4 135 60.0
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.6e-39 164.5 96 78.1
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.5e-38 163.3 139 59.0
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 2.0e-35 152.9 95 73.7
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.0e-35 152.9 95 74.7
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.1e-33 147.1 115 60.0
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 2.4e-33 146.0 114 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 4.6e-32 141.7 129 50.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 4.3e-30 135.2 121 55.4
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 2.3e-28 129.4 123 44.7
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 6.4e-26 121.3 112 50.9
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 1.0e-23 114.0 61 82.0
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 5.0e-23 111.7 96 56.2
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.9e-22 109.8 88 61.4
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 1.7e-18 96.7 75 60.0
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 7.1e-17 91.3 101 43.6
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 7.1e-17 91.3 53 79.2
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.2e-16 90.5 53 79.2
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.6e-16 90.1 67 56.7
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 3.5e-16 89.0 53 77.4
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 5.1e-15 85.1 51 74.5
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.1e-14 84.0 59 66.1
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.5e-14 83.6 45 82.2
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 1.2e-13 80.5 48 70.8
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 1.6e-13 80.1 59 64.4
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 6.4e-10 68.2 43 65.1
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 2.1e-08 63.2 94 40.4
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.3e-07 60.5 71 39.4


User provided reference genes

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