Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.9e-69 265.8 138 100.0
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.7e-54 216.1 137 81.8
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 6.5e-54 214.2 137 81.0
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 8.5e-54 213.8 137 79.6
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.1e-53 213.4 137 79.6
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 2.5e-53 212.2 137 79.6
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 5.5e-53 211.1 137 81.0
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 7.2e-53 210.7 133 79.7
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 7.2e-53 210.7 133 78.9
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 7.2e-53 210.7 137 79.6
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 9.4e-53 210.3 137 79.6
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.6e-52 209.5 137 78.8
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.1e-52 209.1 138 79.0
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 3.6e-52 208.4 137 78.8
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 3.6e-52 208.4 137 80.3
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 4.7e-52 208.0 138 77.5
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 6.1e-52 207.6 137 77.4
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 8.0e-52 207.2 137 78.1
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 8.0e-52 207.2 137 77.4
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 1.4e-51 206.5 137 76.6
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 1.4e-51 206.5 133 79.7
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 1.8e-51 206.1 129 80.6
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 3.0e-51 205.3 137 75.9
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 3.0e-51 205.3 137 78.1
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 3.9e-51 204.9 137 78.8
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.9e-51 204.9 137 75.9
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 5.2e-51 204.5 133 77.4
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 5.2e-51 204.5 124 83.1
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.7e-51 204.1 137 78.1
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 6.7e-51 204.1 137 76.6
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 8.8e-51 203.8 134 77.6
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 8.8e-51 203.8 134 77.6
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 8.8e-51 203.8 137 79.6
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 8.8e-51 203.8 134 77.6
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.1e-50 203.4 129 78.3
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.5e-50 203.0 134 76.1
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 2.6e-50 202.2 135 76.3
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 3.3e-50 201.8 137 75.9
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.4e-50 201.4 137 76.6
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.4e-50 201.4 137 76.6
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 5.7e-50 201.1 137 75.2
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 5.7e-50 201.1 133 75.9
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 5.7e-50 201.1 137 75.2
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 7.4e-50 200.7 134 76.1
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 7.4e-50 200.7 137 77.4
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 9.7e-50 200.3 137 75.2
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 9.7e-50 200.3 129 79.1
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 9.7e-50 200.3 125 81.6
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 1.3e-49 199.9 137 75.9
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.7e-49 199.5 137 76.6
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.7e-49 199.5 137 76.6
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.7e-49 199.5 137 76.6
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 3.7e-49 198.4 119 82.4
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.7e-49 198.4 137 77.4
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 6.3e-49 197.6 134 75.4
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 6.3e-49 197.6 138 72.5
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 6.3e-49 197.6 138 72.5
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 8.2e-49 197.2 138 76.1
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 1.4e-48 196.4 137 74.5
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.4e-48 196.4 137 72.3
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 2.4e-48 195.7 139 72.7
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 2.4e-48 195.7 124 79.8
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 2.4e-48 195.7 139 74.1
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.1e-48 195.3 137 74.5
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 3.1e-48 195.3 133 72.9
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 4.1e-48 194.9 162 65.4
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 5.3e-48 194.5 134 74.6
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 5.3e-48 194.5 137 73.7
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 7.0e-48 194.1 137 73.7
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 7.0e-48 194.1 137 73.7
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 3.5e-47 191.8 122 77.9
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 7.7e-47 190.7 126 76.2
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.3e-46 189.9 132 75.0
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.9e-46 188.7 132 74.2
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 2.9e-46 188.7 132 74.2
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 5.0e-46 188.0 132 74.2
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 6.5e-46 187.6 126 75.4
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 8.5e-46 187.2 135 71.9
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.1e-45 186.8 132 73.5
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.1e-45 186.8 132 73.5
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 1.1e-45 186.8 132 73.5
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 1.1e-45 186.8 132 73.5
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 1.5e-45 186.4 118 76.3
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 1.5e-45 186.4 133 70.7
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 2.5e-45 185.7 132 72.0
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.5e-45 185.7 137 72.3
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.5e-45 185.7 137 72.3
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 4.2e-45 184.9 132 72.7
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 4.2e-45 184.9 128 74.2
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 4.2e-45 184.9 133 70.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 5.5e-45 184.5 133 69.9
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 7.2e-45 184.1 137 72.3
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 9.4e-45 183.7 133 69.9
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 3.6e-44 181.8 124 72.6
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 4.7e-44 181.4 124 75.8
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.4e-43 179.9 130 69.2
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 1.4e-43 179.9 122 72.1
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.3e-43 179.1 125 72.0
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.0e-43 178.7 123 74.8
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 4.0e-43 178.3 121 71.9
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 4.0e-43 178.3 133 69.2
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 6.8e-43 177.6 132 69.7
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.0e-42 176.0 114 76.3
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 4.4e-42 174.9 135 68.9
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 4.8e-41 171.4 107 78.5
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 4.5e-39 164.9 132 64.4
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 1.0e-38 163.7 134 63.4
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.3e-38 163.3 129 67.4
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.9e-38 162.2 119 68.9
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 4.2e-37 158.3 139 64.7
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.1e-36 156.0 138 58.7
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 4.9e-33 144.8 83 85.5
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 1.1e-32 143.7 121 64.5
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 2.0e-31 139.4 142 54.2
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 5.9e-31 137.9 135 55.6
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 2.3e-30 136.0 122 63.9
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 3.8e-30 135.2 113 62.8
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 3.6e-28 128.6 100 65.0
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.3e-27 125.9 137 56.9
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 9.8e-26 120.6 121 57.0
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 9.8e-26 120.6 110 57.3
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 6.3e-25 117.9 123 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.8e-24 116.3 106 55.7
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.7e-23 112.5 132 53.0
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 6.6e-22 107.8 80 70.0
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.4e-18 95.1 72 72.2
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-18 94.7 138 42.8
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.3e-17 93.6 85 56.5
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 6.8e-11 71.2 176 31.2
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 8.3e-09 64.3 37 81.1
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 7.1e-08 61.2 116 37.9
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.2e-07 60.5 132 34.8
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 8.6e-06 54.3 34 76.5


User provided reference genes

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