Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 2129.8 1103 100.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1511.5 1134 71.4
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1439.9 1098 69.3
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1424.5 1116 69.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1397.5 1117 67.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1095 67.8
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1117 66.6
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1131 66.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1114 66.4
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1364.0 1109 66.4
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1357.0 1103 65.9
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1352.0 1095 66.4
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1350.9 1122 65.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1350.9 1117 65.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1109 65.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1341.3 1113 65.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1340.5 1116 65.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1338.2 1112 64.3
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1336.2 1109 65.3
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1335.9 1110 65.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1333.9 1112 65.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1332.0 1112 64.7
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1331.2 1097 66.0
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1325.5 1116 65.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1324.7 1111 64.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1324.3 1112 65.5
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1322.0 1088 66.4
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1322.0 1116 63.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1321.2 1105 64.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1318.5 1116 64.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1316.6 1112 64.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1109 63.8
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1315.8 1100 65.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1315.4 1099 65.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1314.3 1109 65.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1313.9 1115 64.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1305.4 1105 64.1
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1302.7 1106 63.7
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1301.6 1138 63.6
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1301.2 1100 64.5
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1298.1 1107 63.6
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1104 62.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1293.9 1097 64.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1288.1 1055 67.0
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1113 64.5
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1286.2 1115 64.7
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1285.0 1124 63.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1282.3 1060 65.4
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1281.5 1064 64.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1279.2 1109 63.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1277.3 1174 60.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1276.2 1065 64.5
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1275.8 1105 63.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1275.4 1064 64.7
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1273.8 1111 63.8
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1271.5 1144 62.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1271.1 1111 63.6
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1268.8 1110 61.5
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1118 62.1
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1260.0 1088 63.5
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1257.3 1112 62.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1251.5 1095 62.6
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1242.3 1100 62.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1240.7 1111 61.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1228.0 1116 61.4
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1226.8 1114 61.0
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1224.9 1113 61.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1219.5 1114 61.3
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1217.2 1115 60.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1216.4 1112 60.5
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1212.2 1121 61.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1211.8 1061 62.4
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1206.8 1108 59.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1206.4 1121 60.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1205.7 1117 60.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1205.3 1117 58.7
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1203.7 1061 62.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1202.6 1023 65.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1201.8 1061 62.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1198.7 1054 61.5
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1198.0 1063 61.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1192.9 1062 61.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1182.9 1065 61.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1181.0 1031 62.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1174.1 1053 61.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1173.7 1113 58.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1166.4 1058 60.0
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1164.1 1026 63.8
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1147.5 1281 53.3
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1109.0 1040 61.2
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1090.1 1069 56.2
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1085.9 1069 55.3
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1082.8 1351 50.0
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1081.6 914 63.9
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1081.2 914 63.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1075.8 1112 56.1
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 1.4e-300 1036.6 1077 54.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.7e-298 1029.6 916 61.4
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 8.5e-298 1027.3 1040 57.6
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.9e-297 1026.2 975 60.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.7e-296 1022.3 931 61.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.2e-272 943.7 911 60.5
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.8e-239 833.6 666 66.5
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 6.7e-226 788.5 1100 43.1
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.6e-224 783.9 1101 42.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.4e-223 780.0 805 57.4
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.5e-222 775.8 1083 43.7
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.2e-220 769.6 1101 42.5
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.3e-218 763.5 1005 49.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.3e-217 759.2 1097 41.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.2e-216 756.9 903 52.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-215 754.6 802 55.6
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.2e-206 724.5 903 51.6
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.4e-188 661.8 1035 38.4
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.1e-183 646.7 649 55.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 9.5e-180 635.2 655 57.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.9e-168 596.3 494 63.8
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.8e-163 580.5 489 63.4
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.2e-158 565.1 412 73.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.7e-158 563.9 429 71.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 9.9e-145 518.8 491 58.0
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-130 472.2 406 65.8
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.3e-125 454.5 443 57.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 4.9e-112 410.2 813 35.2
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.3e-109 401.4 350 61.4
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.8e-107 393.7 371 59.0
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.5e-103 380.2 654 39.6
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.0e-92 345.1 194 85.6
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.2e-79 300.1 346 51.7
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 6.1e-78 297.0 232 69.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.2e-75 288.5 318 49.7
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 8.5e-72 276.6 567 36.3
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.5e-71 275.0 152 83.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.0e-68 265.4 1069 25.1
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.7e-67 262.3 196 64.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 3.0e-61 241.5 193 66.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.4e-60 237.7 1254 21.9
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.6e-54 218.0 510 33.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 4.0e-53 214.5 209 56.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 4.6e-49 201.1 221 52.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 7.8e-49 200.3 107 86.0
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 8.0e-46 190.3 107 84.1
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.8e-45 187.2 109 80.7
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-42 179.1 172 61.6
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-42 179.1 172 61.6
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.4e-42 177.6 140 66.4
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 3.6e-38 164.9 138 69.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.2e-37 161.0 122 74.6
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.1e-34 153.3 1145 20.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-33 149.8 87 80.5
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.6e-33 149.4 85 81.2
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.6e-33 147.9 83 84.3
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 8.6e-32 143.7 156 51.3
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 6.2e-30 137.5 133 57.9
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.8e-29 136.0 110 69.1
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.8e-29 136.0 112 65.2
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-29 135.2 150 50.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 8.9e-29 133.7 120 57.5
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.4e-28 131.7 188 48.9
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 7.6e-28 130.6 134 53.0
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-26 126.3 112 58.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.7e-24 117.1 165 47.9
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-23 115.9 88 73.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.4e-21 109.8 112 52.7
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.5e-20 106.3 111 58.6
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 8.4e-19 100.5 85 57.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.1e-18 100.1 95 54.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 7.1e-18 97.4 49 87.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.2e-17 96.7 102 52.0
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.7e-17 95.5 49 85.7
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.5e-15 89.7 49 79.6
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.3e-14 86.7 84 50.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 8.4e-11 73.9 48 77.1
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 5.1e-08 64.7 45 64.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 1.6e-06 59.7 59 55.9


User provided reference genes

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