Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.8e-105 386.3 266 100.0
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.2e-65 252.3 281 71.2
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 3.5e-64 249.2 269 73.6
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 3.0e-63 246.1 238 82.8
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 8.7e-63 244.6 229 81.7
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 8.7e-63 244.6 277 74.7
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 3.3e-62 242.7 266 74.4
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 3.3e-62 242.7 246 79.7
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.3e-62 242.7 270 71.5
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 3.3e-62 242.7 274 72.6
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 4.3e-62 242.3 271 71.6
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 5.6e-62 241.9 255 77.6
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 7.3e-62 241.5 269 74.0
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 9.6e-62 241.1 212 90.6
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 9.6e-62 241.1 212 90.6
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.3e-61 240.7 270 73.3
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.6e-61 240.4 275 72.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.6e-61 240.4 271 73.8
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.1e-61 240.0 284 71.1
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.1e-61 240.0 278 72.3
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.8e-61 239.6 275 72.0
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 2.8e-61 239.6 276 72.5
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 6.2e-61 238.4 236 82.2
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.1e-60 237.7 277 69.7
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.1e-60 237.7 265 66.4
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.8e-60 236.9 273 71.8
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.8e-60 236.9 270 71.5
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.1e-60 236.1 270 73.0
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 3.1e-60 236.1 281 72.6
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 5.3e-60 235.3 275 71.6
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 6.9e-60 235.0 268 74.6
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 6.9e-60 235.0 254 62.6
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 6.9e-60 235.0 242 78.1
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.5e-59 233.8 271 70.5
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.5e-59 233.8 219 84.9
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.5e-59 233.8 257 76.3
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 2.0e-59 233.4 269 74.3
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 2.6e-59 233.0 278 70.1
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 3.4e-59 232.6 279 69.5
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 5.8e-59 231.9 247 78.5
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 7.6e-59 231.5 286 67.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 9.9e-59 231.1 221 82.4
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.3e-58 230.7 277 68.6
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.7e-58 230.3 214 75.7
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.2e-58 229.9 280 70.4
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 2.9e-58 229.6 273 73.3
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-58 229.6 260 75.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-58 229.6 260 75.4
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 2.9e-58 229.6 217 85.3
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 3.8e-58 229.2 233 82.8
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.8e-58 229.2 310 45.2
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 6.4e-58 228.4 278 62.9
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.1e-57 227.6 289 57.8
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 1.1e-57 227.6 267 59.6
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.1e-57 227.6 217 85.3
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.4e-57 227.3 280 70.0
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 4.2e-57 225.7 223 82.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 4.2e-57 225.7 280 70.0
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 5.4e-57 225.3 280 70.0
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 9.3e-57 224.6 282 69.5
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.2e-56 224.2 282 69.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.2e-56 224.2 217 78.8
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 2.1e-56 223.4 282 72.0
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 2.1e-56 223.4 209 87.1
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.1e-56 223.4 281 69.0
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.7e-56 223.0 280 63.9
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.6e-56 222.2 257 75.1
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 6.0e-56 221.9 281 68.3
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 6.0e-56 221.9 223 82.1
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.0e-55 221.1 281 68.3
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 3.0e-55 219.5 221 83.3
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.9e-55 219.2 223 81.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 6.7e-55 218.4 280 60.0
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.1e-54 217.6 232 77.2
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 3.3e-54 216.1 244 77.0
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 4.3e-54 215.7 218 83.5
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.7e-53 212.6 248 74.6
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 3.7e-53 212.6 194 85.1
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.8e-53 212.2 255 54.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.1e-52 211.1 194 88.1
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.1e-52 211.1 275 70.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 5.8e-51 205.3 337 44.2
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.8e-50 202.6 192 76.0
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 2.7e-48 196.4 182 84.1
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 9.6e-46 188.0 216 63.4
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 3.7e-45 186.0 216 64.8
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 3.7e-45 186.0 206 65.5
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.4e-44 183.3 221 72.9
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.9e-40 168.3 187 58.3
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.9e-38 163.7 86 88.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 7.4e-38 161.8 85 88.2
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.3e-37 161.0 88 85.2
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 4.8e-37 159.1 88 87.5
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 8.2e-37 158.3 85 88.2
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-36 157.9 88 86.4
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-36 157.9 88 86.4
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 3.4e-35 152.9 85 85.9
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.3e-34 151.0 180 51.7
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.2e-29 133.7 184 52.7
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.2e-24 117.9 205 68.8
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 5.1e-23 112.5 177 64.4
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.0e-22 110.5 91 64.8
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 3.3e-22 109.8 143 58.7
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 9.7e-22 108.2 91 64.8
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 7.7e-19 98.6 153 81.7
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.2e-18 97.1 68 70.6
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 2.1e-16 90.5 61 70.5
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 6.1e-16 89.0 190 49.5
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 4.1e-12 76.3 43 86.0
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.9e-11 72.4 53 69.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 8.5e-10 68.6 88 51.1
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.1e-09 68.2 66 54.5
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.0e-07 60.1 40 72.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.6e-06 57.0 52 55.8


User provided reference genes

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