Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0005190 Simmondsia chinensis HOM05D003334 ORTHO05D004076 1.8e-81 305.8 154 100.0
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 3.6e-77 291.6 154 93.5
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 6.1e-77 290.8 154 94.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.1e-77 290.8 154 94.2
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 5.2e-76 287.7 154 92.9
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 5.2e-76 287.7 154 92.9
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 1.2e-75 286.6 154 93.5
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 1.5e-75 286.2 154 92.9
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 2.0e-75 285.8 154 92.9
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 9.8e-75 283.5 154 92.9
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 9.8e-75 283.5 154 90.9
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 2.8e-74 282.0 154 89.6
Oeu063204.2 Olea europaea HOM05D003334 ORTHO05D004076 2.8e-74 282.0 154 89.6
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 8.3e-74 280.4 154 87.7
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 1.4e-73 279.6 152 90.8
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 1.8e-73 279.3 154 89.0
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 1.8e-73 279.3 154 88.3
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.8e-73 279.3 154 88.3
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 2.4e-73 278.9 152 90.8
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.4e-73 278.9 154 87.0
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 3.1e-73 278.5 154 89.6
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 3.1e-73 278.5 152 89.5
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 3.1e-73 278.5 151 90.7
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 5.4e-73 277.7 152 90.8
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 5.4e-73 277.7 154 89.0
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 1.2e-72 276.6 154 89.0
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.2e-72 276.6 154 88.3
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.7e-72 275.4 154 85.7
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 3.5e-72 275.0 154 89.0
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 4.5e-72 274.6 154 89.0
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 5.9e-72 274.2 154 87.0
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 5.9e-72 274.2 154 88.3
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 5.9e-72 274.2 154 87.7
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 7.7e-72 273.9 154 86.4
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 1.0e-71 273.5 154 86.4
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.0e-71 273.5 154 87.7
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 1.0e-71 273.5 154 87.7
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 1.3e-71 273.1 153 88.9
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 2.2e-71 272.3 154 85.7
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.9e-71 271.9 154 85.7
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 6.5e-71 270.8 154 85.1
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 8.5e-71 270.4 152 86.8
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 8.5e-71 270.4 154 86.4
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-70 270.0 154 85.7
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-70 270.0 154 85.7
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 1.1e-70 270.0 154 87.7
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.5e-70 269.6 154 86.4
QL01p002104 Quercus lobata HOM05D003334 ORTHO05D004076 3.2e-70 268.5 153 87.6
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 5.5e-70 267.7 154 87.0
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 7.2e-70 267.3 154 85.1
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 7.2e-70 267.3 156 85.9
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 9.4e-70 266.9 154 85.1
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 9.4e-70 266.9 154 85.1
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 9.4e-70 266.9 154 85.1
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 9.4e-70 266.9 154 84.4
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 9.4e-70 266.9 154 83.1
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 1.2e-69 266.5 154 85.1
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 1.2e-69 266.5 154 84.4
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 1.2e-69 266.5 154 86.4
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 1.6e-69 266.2 154 86.4
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 1.6e-69 266.2 154 85.1
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 1.6e-69 266.2 154 84.4
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 2.1e-69 265.8 154 85.7
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.1e-69 265.8 154 84.4
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 2.7e-69 265.4 154 86.4
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 3.6e-69 265.0 154 83.8
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 3.6e-69 265.0 154 83.8
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 3.6e-69 265.0 156 84.6
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 3.6e-69 265.0 154 83.8
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 3.6e-69 265.0 154 84.4
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 3.6e-69 265.0 154 85.1
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 4.7e-69 264.6 153 83.7
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 4.7e-69 264.6 156 84.6
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 6.1e-69 264.2 154 84.4
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 6.1e-69 264.2 152 85.5
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 1.0e-68 263.5 154 85.7
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 1.0e-68 263.5 154 82.5
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 1.4e-68 263.1 154 83.1
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 1.8e-68 262.7 152 84.9
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 2.3e-68 262.3 154 83.8
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 2.3e-68 262.3 154 81.8
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 3.0e-68 261.9 161 81.4
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 4.0e-68 261.5 154 85.1
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 5.2e-68 261.2 162 80.9
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 8.8e-68 260.4 154 81.8
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 8.8e-68 260.4 154 84.4
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 8.8e-68 260.4 154 84.4
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.2e-67 260.0 152 83.6
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 3.4e-67 258.5 154 83.8
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.4e-67 258.5 154 83.8
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 4.4e-67 258.1 154 83.1
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 4.4e-67 258.1 142 89.4
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 5.7e-67 257.7 140 91.4
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 5.7e-67 257.7 154 83.8
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 7.5e-67 257.3 154 81.2
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 9.8e-67 256.9 154 83.1
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 9.8e-67 256.9 154 83.1
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 2.2e-66 255.8 152 81.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.8e-66 255.4 136 90.4
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 3.7e-66 255.0 152 81.6
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 3.7e-66 255.0 136 91.9
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 3.7e-66 255.0 154 82.5
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 8.3e-66 253.8 181 74.6
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.4e-65 253.1 154 81.8
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 4.1e-65 251.5 154 81.2
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 4.1e-65 251.5 154 81.2
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 7.0e-65 250.8 204 65.7
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 7.0e-65 250.8 152 80.9
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 1.6e-64 249.6 152 81.6
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 5.9e-64 247.7 154 78.6
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 8.6e-63 243.8 154 76.6
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 4.2e-62 241.5 152 76.3
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 1.6e-61 239.6 148 79.7
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 4.7e-61 238.0 136 85.3
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 1.4e-60 236.5 154 76.6
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 3.0e-60 235.3 143 80.4
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 8.9e-60 233.8 154 77.9
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-59 233.0 156 76.3
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 1.5e-59 233.0 136 85.3
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 2.6e-59 232.3 136 84.6
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 4.9e-58 228.0 164 72.0
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 5.4e-57 224.6 155 75.5
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 1.6e-56 223.0 152 71.7
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 2.0e-56 222.6 154 72.7
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 2.7e-56 222.2 156 71.2
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 6.6e-55 217.6 149 69.1
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 8.6e-55 217.2 154 70.8
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 8.6e-55 217.2 154 70.8
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 8.6e-55 217.2 127 82.7
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.5e-54 216.5 131 82.4
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 2.5e-54 215.7 154 70.8
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 8.0e-53 210.7 148 70.3
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.8e-52 209.5 164 70.1
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.8e-52 209.5 153 68.6
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 4.0e-52 208.4 150 69.3
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 4.0e-52 208.4 150 69.3
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 1.2e-51 206.8 114 87.7
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 2.2e-50 202.6 152 69.1
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 4.1e-49 198.4 210 56.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-48 196.1 138 70.3
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 3.5e-48 195.3 136 70.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.0e-47 193.7 138 69.6
Sabra04G0133700 Salix brachista HOM05D003334 ORTHO05D004076 3.9e-47 191.8 147 68.0
ECA233G4312 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.9e-46 189.5 121 75.2
AagrBONN_evm.TU.Sc2ySwM_228.5148 Anthoceros agrestis HOM05D003334 ORTHO05D004076 2.8e-45 185.7 152 65.1
BolC3t16384H Brassica oleracea HOM05D003334 ORTHO05D004076 2.8e-45 185.7 123 77.2
C03p40970 Brassica napus HOM05D003334 ORTHO05D004076 1.8e-44 183.0 123 75.6
BolC3t16371H Brassica oleracea HOM05D003334 ORTHO05D004076 1.8e-44 183.0 123 76.4
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 1.8e-44 183.0 147 60.5
BolC3t16373H Brassica oleracea HOM05D003334 ORTHO05D004076 4.0e-44 181.8 123 75.6
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.5e-43 179.9 99 86.9
Nitab4.5_0000288g0150 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.4e-41 173.3 102 83.3
TPR.G21208 Trifolium pratense HOM05D003334 ORTHO05D004076 5.4e-41 171.4 136 68.4
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.6e-40 169.9 191 54.5
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 1.3e-39 166.8 148 56.8
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 1.1e-36 157.1 146 61.0
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 4.1e-33 145.2 78 89.7
Cc02_g30090 Coffea canephora HOM05D003334 ORTHO05D004076 9.9e-27 124.0 78 76.9
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.7e-26 123.2 129 57.4
SMO115G0240 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 5.6e-22 108.2 140 38.6
SEGI_09752 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 2.1e-21 106.3 66 78.8
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 2.4e-20 102.8 81 67.9
QL12p030357 Quercus lobata HOM05D003334 ORTHO05D004076 2.4e-20 102.8 95 58.9
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 5.3e-20 101.7 53 92.5
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 9.0e-20 100.9 74 67.6
SEGI_19003 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 1.6e-16 90.1 67 65.7
RcHm_v2.0_Chr7g0219201 Rosa chinensis HOM05D003334 ORTHO05D004076 4.3e-14 82.0 49 85.7
Nitab4.5_0009273g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 9.6e-14 80.9 48 87.5
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.3e-13 80.5 154 37.0
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 8.4e-10 67.8 61 52.5
Nitab4.5_0006136g0030 Nicotiana tabacum HOM05D000111 ORTHO05D001334 3.2e-09 65.9 36 88.9
Peaxi162Scf00145g00156 Petunia axillaris HOM05D003334 ORTHO05D004076 5.5e-09 65.1 40 77.5
BcaC06g36447 Brassica carinata HOM05D003334 ORTHO05D000065 3.0e-07 59.3 38 78.9
CsaV3_5G014470 Cucumis sativus L. HOM05D003334 ORTHO05D004076 1.9e-06 56.6 31 87.1


User provided reference genes

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