Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002900 Simmondsia chinensis HOM05D000234 ORTHO05D000335 7.8e-64 246.9 119 100.0
Sc06g0002930 Simmondsia chinensis HOM05D000234 ORTHO05D000335 1.0e-15 87.0 61 67.2
Sc06g0002910 Simmondsia chinensis HOM05D000234 ORTHO05D000335 2.4e-12 75.9 44 79.5
SGA_v2.0_scaffold535G52768 Striga asiatica HOM05D000234 ORTHO05D000335 3.4e-11 72.0 44 65.9
Migut.M01964 Erythranthe guttata HOM05D000234 ORTHO05D000335 2.2e-10 69.3 68 47.1
RcHm_v2.0_Chr5g0019581 Rosa chinensis HOM05D000234 ORTHO05D000335 5.0e-10 68.2 44 63.6
FAN21G3804 Fragaria x ananassa HOM05D000234 ORTHO05D000335 8.5e-10 67.4 44 61.4
Rhsim03G0243300 Rhododendron simsii HOM05D000234 ORTHO05D000335 1.4e-09 66.6 44 63.6
FvH4_3g11980 Fragaria vesca HOM05D000234 ORTHO05D000335 1.9e-09 66.2 44 59.1
FAN16G2044 Fragaria x ananassa HOM05D000234 ORTHO05D000335 1.9e-09 66.2 44 59.1
Peaxi162Scf00623g00518 Petunia axillaris HOM05D000234 ORTHO05D000335 1.9e-09 66.2 68 45.6
CANSAT35G0458 Cannabis sativa HOM05D000234 ORTHO05D000335 2.5e-09 65.9 43 67.4
Cc09_g06770 Coffea canephora HOM05D000234 ORTHO05D000335 3.2e-09 65.5 44 61.4
SalBow8G5357 Salvia bowleyana HOM05D000234 ORTHO05D000335 3.2e-09 65.5 68 42.6
CSS0022104 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.2e-09 65.1 44 63.6
CSS0024752 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.2e-09 65.1 44 63.6
CSS0034476 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.2e-09 65.1 44 63.6
CSS0034580 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.2e-09 65.1 44 63.6
GSVIVG01026264001 Vitis vinifera HOM05D000234 ORTHO05D000335 5.5e-09 64.7 44 63.6
Rhsim03G0243200 Rhododendron simsii HOM05D000234 ORTHO05D000335 7.2e-09 64.3 44 61.4
Oeu008718.1 Olea europaea HOM05D000234 ORTHO05D000335 9.4e-09 63.9 45 60.0
Sc06g0002960 Simmondsia chinensis HOM05D000234 ORTHO05D000335 9.4e-09 63.9 44 63.6
PGSC0003DMG400021212 Solanum tuberosum HOM05D000234 ORTHO05D000335 9.4e-09 63.9 68 45.6
GSVIVG01026261001 Vitis vinifera HOM05D000234 ORTHO05D000335 9.4e-09 63.9 44 63.6
Actinidia22377 Actinidia chinensis HOM05D000234 ORTHO05D000335 1.2e-08 63.5 64 46.9
CiPaw.10G066000 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.2e-08 63.5 44 63.6
Lj1C1142T12 Lonicera japonica HOM05D000234 ORTHO05D000335 1.2e-08 63.5 44 59.1
Oeu045613.1 Olea europaea HOM05D000234 ORTHO05D000335 1.2e-08 63.5 48 58.3
Dinv11858 Davidia involucrata HOM05D000234 ORTHO05D000335 1.6e-08 63.2 44 59.1
Rhsim03G0243400 Rhododendron simsii HOM05D000234 ORTHO05D000335 1.6e-08 63.2 44 59.1
vmacro03499 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 1.6e-08 63.2 44 61.4
Cc09_g06780 Coffea canephora HOM05D000234 ORTHO05D000335 2.1e-08 62.8 44 63.6
Dinv01302 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-08 62.8 55 52.7
Dinv11860 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-08 62.8 44 61.4
GSVIVG01026268001 Vitis vinifera HOM05D000234 ORTHO05D000335 2.1e-08 62.8 70 47.1
Actinidia35150 Actinidia chinensis HOM05D000234 ORTHO05D000335 2.7e-08 62.4 44 59.1
CiPaw.09G079500 Carya illinoinensis HOM05D000234 ORTHO05D000335 2.7e-08 62.4 42 64.3
MD10G1236300 Malus domestica HOM05D000234 ORTHO05D000335 2.7e-08 62.4 41 68.3
Prupe.4G108100 Prunus persica HOM05D000234 ORTHO05D000335 2.7e-08 62.4 44 59.1
PGSC0003DMG400021213 Solanum tuberosum HOM05D000234 ORTHO05D000335 2.7e-08 62.4 68 44.1
TAR626G0519 Trochodendron aralioides HOM05D000234 ORTHO05D000335 2.7e-08 62.4 44 59.1
Cfa000958 Carpinus fangiana HOM05D000234 ORTHO05D000335 3.6e-08 62.0 44 61.4
Dinv11861 Davidia involucrata HOM05D000234 ORTHO05D000335 3.6e-08 62.0 42 64.3
Migut.M01963 Erythranthe guttata HOM05D000234 ORTHO05D000335 3.6e-08 62.0 44 59.1
Hund06836 Selenicereus undatus HOM05D000234 ORTHO05D000335 3.6e-08 62.0 44 63.6
Actinidia35148 Actinidia chinensis HOM05D000234 ORTHO05D000335 4.7e-08 61.6 57 49.1
CSS0023206 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 4.7e-08 61.6 44 59.1
Haze_05576 Corylus avellana HOM05D000234 ORTHO05D000335 4.7e-08 61.6 44 59.1
Duzib192G0161 Durio zibethinus HOM05D000234 ORTHO05D000335 4.7e-08 61.6 41 61.0
Manes.16G048683 Manihot esculenta HOM05D000234 ORTHO05D000335 4.7e-08 61.6 42 64.3
EL10Ac4g08821 Beta vulgaris HOM05D000234 ORTHO05D000335 6.1e-08 61.2 44 63.6
Gohir.A06G140700 Gossypium hirsutum HOM05D000234 ORTHO05D000335 6.1e-08 61.2 41 63.4
Gohir.D06G147400 Gossypium hirsutum HOM05D000234 ORTHO05D000335 6.1e-08 61.2 41 63.4
Gorai.010G171800 Gossypium raimondii HOM05D000234 ORTHO05D000335 6.1e-08 61.2 41 63.4
HanXRQChr16g0528211 Helianthus annuus HOM05D000234 ORTHO05D000335 6.1e-08 61.2 44 56.8
Lsat_1_v5_gn_4_22040 Lactuca sativa HOM05D000234 ORTHO05D000335 6.1e-08 61.2 44 54.5
Prupe.4G108000 Prunus persica HOM05D000234 ORTHO05D000335 6.1e-08 61.2 44 59.1
Thecc.06G138000 Theobroma cacao HOM05D000234 ORTHO05D000335 6.1e-08 61.2 41 63.4
Atru.chr10.596 Acer truncatum HOM05D000234 ORTHO05D000335 7.9e-08 60.8 68 44.1
DCAR_007791 Daucus carota HOM05D000234 ORTHO05D000335 7.9e-08 60.8 44 59.1
Eucgr.D00106 Eucalyptus grandis HOM05D000234 ORTHO05D000335 7.9e-08 60.8 42 61.9
TWI63G0586 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 7.9e-08 60.8 42 59.5
vmacro06212 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 7.9e-08 60.8 44 56.8
CSS0002628 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.0e-07 60.5 44 56.8
DCAR_004316 Daucus carota HOM05D000234 ORTHO05D000335 1.0e-07 60.5 44 59.1
MD10G1236400 Malus domestica HOM05D000234 ORTHO05D000335 1.0e-07 60.5 42 59.5
Solyc02g069260.3 Solanum lycopersicum HOM05D000234 ORTHO05D000335 1.0e-07 60.5 44 59.1
TWI38G0717 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 1.0e-07 60.5 42 59.5
TAR624G0568 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.0e-07 60.5 44 56.8
VMungo0251G2680 Vigna mungo HOM05D000234 ORTHO05D000335 1.0e-07 60.5 43 60.5
Duzib235G1469 Durio zibethinus HOM05D000234 ORTHO05D000335 1.4e-07 60.1 41 61.0
PGR083G1759 Punica granatum HOM05D000234 ORTHO05D000335 1.4e-07 60.1 42 59.5
CAN.G1202.12 Capsicum annuum HOM05D000234 ORTHO05D000335 1.8e-07 59.7 44 56.8
Nn7g38055 Nelumbo nucifera HOM05D000234 ORTHO05D000335 1.8e-07 59.7 44 61.4
Nn7g38057 Nelumbo nucifera HOM05D000234 ORTHO05D000335 1.8e-07 59.7 44 61.4
Potri.012G118700 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.8e-07 59.7 42 61.9
Sopen02g018420 Solanum pennellii HOM05D000234 ORTHO05D000335 1.8e-07 59.7 44 59.1
HanXRQChr16g0528251 Helianthus annuus HOM05D000234 ORTHO05D000335 2.3e-07 59.3 44 54.5
Nitab4.5_0005030g0010 Nicotiana tabacum HOM05D000234 ORTHO05D000335 2.3e-07 59.3 44 56.8
QL07p031563 Quercus lobata HOM05D000234 ORTHO05D000335 2.3e-07 59.3 60 46.7
Sabra12G0089900 Salix brachista HOM05D000234 ORTHO05D000335 2.3e-07 59.3 41 63.4
Aqoxy1G01496 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 3.0e-07 58.9 44 59.1
Rhsim13G0129900 Rhododendron simsii HOM05D000234 ORTHO05D000335 3.0e-07 58.9 44 56.8
vmacro06213 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 3.0e-07 58.9 44 54.5
Eucgr.D00109 Eucalyptus grandis HOM05D000234 ORTHO05D000335 3.9e-07 58.5 60 48.3
Eucgr.D01097 Eucalyptus grandis HOM05D000234 ORTHO05D000335 3.9e-07 58.5 60 50.0
MD05G1256100 Malus domestica HOM05D000234 ORTHO05D000335 3.9e-07 58.5 44 52.3
Phvul.002G100100 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 3.9e-07 58.5 43 58.1
Sabra15G0135600 Salix brachista HOM05D000234 ORTHO05D000335 3.9e-07 58.5 42 59.5
TWI63G1642 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 3.9e-07 58.5 42 61.9
AUR62034122 Chenopodium quinoa HOM05D000234 ORTHO05D000335 5.1e-07 58.2 41 65.9
Eucgr.D00105 Eucalyptus grandis HOM05D000234 ORTHO05D000335 5.1e-07 58.2 42 57.1
PGSC0003DMG400021211 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.1e-07 58.2 68 42.6
arahy.Tifrunner.gnm1.ann1.M7MYIY Arachis hypogaea HOM05D000234 ORTHO05D000335 6.7e-07 57.8 62 54.8
MSTRG.7582 Avicennia marina HOM05D000234 ORTHO05D000335 6.7e-07 57.8 42 59.5
ECA234G4015 Erigeron canadensis HOM05D000234 ORTHO05D000335 6.7e-07 57.8 44 56.8
Manes.07G023100 Manihot esculenta HOM05D000234 ORTHO05D000335 6.7e-07 57.8 41 58.5
Phvul.006G131700 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 6.7e-07 57.8 66 47.0
QL07p030475 Quercus lobata HOM05D000234 ORTHO05D000335 6.7e-07 57.8 55 49.1
SalBow8G0274 Salvia bowleyana HOM05D000234 ORTHO05D000335 6.7e-07 57.8 44 54.5
TPR.G34036 Trifolium pratense HOM05D000234 ORTHO05D000335 6.7e-07 57.8 43 60.5
Duzib235G0982 Durio zibethinus HOM05D000234 ORTHO05D000335 8.8e-07 57.4 43 60.5
Medtr4g083610 Medicago truncatula HOM05D000234 ORTHO05D000335 8.8e-07 57.4 43 60.5
Nitab4.5_0002574g0060 Nicotiana tabacum HOM05D000234 ORTHO05D000335 8.8e-07 57.4 44 54.5
Potri.015G117350 Populus trichocarpa HOM05D000234 ORTHO05D000335 8.8e-07 57.4 42 57.1
Sopen02g018440 Solanum pennellii HOM05D000234 ORTHO05D000335 8.8e-07 57.4 68 42.6
Zm00001eb070760 Zea mays HOM05D000234 ORTHO05D000335 8.8e-07 57.4 44 61.4
Zm00001eb430920 Zea mays HOM05D000234 ORTHO05D000335 8.8e-07 57.4 44 61.4
Ciclev10014153m.g Citrus clementina HOM05D000234 ORTHO05D000335 1.1e-06 57.0 42 57.1
Solyc02g069280.2 Solanum lycopersicum HOM05D000234 ORTHO05D000335 1.1e-06 57.0 68 42.6
CSS0009802 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.5e-06 56.6 44 59.1
Cpa.g.sc135.40 Carica papaya HOM05D000234 ORTHO05D000335 1.5e-06 56.6 42 59.5
Lj6g0020367 Lotus japonicus HOM05D000234 ORTHO05D000335 1.5e-06 56.6 62 48.4
Ciclev10014144m.g Citrus clementina HOM05D000234 ORTHO05D000335 2.0e-06 56.2 41 56.1
Sp1g27110 Schrenkiella parvula HOM05D000234 ORTHO05D000335 2.0e-06 56.2 50 52.0
vmacro06211 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 2.0e-06 56.2 44 52.3
Ca_11351_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 2.6e-06 55.8 43 58.1
Haze_05654 Corylus avellana HOM05D000234 ORTHO05D000335 2.6e-06 55.8 41 58.5
Hma1.2p1_0092F.1_g046850 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 2.6e-06 55.8 40 57.5
Lsat_1_v5_gn_4_22000 Lactuca sativa HOM05D000234 ORTHO05D000335 2.6e-06 55.8 42 52.4
SEGI_27000 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 2.6e-06 55.8 44 52.3
AUR62041289 Chenopodium quinoa HOM05D000234 ORTHO05D000335 3.3e-06 55.5 41 61.0
AUR62042863 Chenopodium quinoa HOM05D000234 ORTHO05D000335 3.3e-06 55.5 41 61.0
COL.COLO4_20190 Corchorus olitorius HOM05D000234 ORTHO05D000335 3.3e-06 55.5 41 61.0
Medtr2g028910 Medicago truncatula HOM05D000234 ORTHO05D000335 3.3e-06 55.5 42 59.5
Os04g0615700 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 3.3e-06 55.5 44 56.8
TPR.G17524 Trifolium pratense HOM05D000234 ORTHO05D000335 3.3e-06 55.5 42 59.5
VMungo0540G0788 Vigna mungo HOM05D000234 ORTHO05D000335 3.3e-06 55.5 62 48.4
Cfa000905 Carpinus fangiana HOM05D000234 ORTHO05D000335 5.7e-06 54.7 41 53.7
Lj2A346T40 Lonicera japonica HOM05D000234 ORTHO05D000335 5.7e-06 54.7 44 56.8
Psat1g169880 Pisum sativum HOM05D000234 ORTHO05D000335 7.4e-06 54.3 41 58.5
Medtr1g038380 Medicago truncatula HOM05D000234 ORTHO05D000335 9.7e-06 53.9 42 61.9


User provided reference genes

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