Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 9.6e-80 300.1 147 100.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 3.0e-65 251.9 145 81.4
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.1e-65 251.1 147 81.0
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.7e-65 250.4 151 82.8
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.9e-64 249.2 148 80.4
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.5e-64 248.8 143 83.2
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.4e-64 247.3 149 79.9
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.7e-64 246.9 149 79.9
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.6e-63 246.1 147 78.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 2.2e-63 245.7 150 80.7
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 2.2e-63 245.7 150 80.7
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.8e-63 244.6 143 82.5
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 6.3e-63 244.2 147 78.2
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.1e-62 243.4 139 82.0
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.4e-62 243.0 148 79.1
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.4e-62 243.0 143 81.1
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.4e-62 243.0 149 77.9
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.4e-62 243.0 144 81.2
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.4e-62 243.0 144 81.2
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 3.1e-62 241.9 139 81.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 3.1e-62 241.9 139 81.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 3.1e-62 241.9 149 77.9
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.1e-62 241.5 144 80.6
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 5.3e-62 241.1 149 77.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 6.9e-62 240.7 157 76.4
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 6.9e-62 240.7 144 79.2
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 9.0e-62 240.4 151 77.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 9.0e-62 240.4 157 75.8
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.2e-61 240.0 152 79.6
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.5e-61 239.6 149 77.9
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.5e-61 239.6 143 80.4
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.5e-61 239.6 139 80.6
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.0e-61 239.2 143 79.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-61 238.8 144 78.5
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.6e-61 238.8 140 81.4
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 3.4e-61 238.4 148 78.4
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 4.5e-61 238.0 143 79.7
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 5.9e-61 237.7 152 75.7
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 7.6e-61 237.3 144 77.8
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 7.6e-61 237.3 145 78.6
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.0e-60 236.9 166 71.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.3e-60 236.5 139 79.1
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-60 236.1 144 77.1
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.7e-60 236.1 143 79.7
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.7e-60 236.1 135 82.2
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.2e-60 235.7 151 74.8
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.2e-60 235.7 147 77.6
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.2e-60 235.7 143 79.0
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.2e-60 235.7 139 79.1
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 2.2e-60 235.7 148 77.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.2e-60 235.7 138 81.9
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.2e-60 235.7 144 79.2
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 145 78.6
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 144 79.2
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.9e-60 235.3 146 80.8
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 3.8e-60 235.0 149 78.5
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 6.5e-60 234.2 147 75.5
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 6.5e-60 234.2 147 75.5
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.5e-60 234.2 145 77.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 8.5e-60 233.8 147 74.8
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.1e-59 233.4 141 77.3
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-59 233.0 144 78.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.4e-59 233.0 132 81.1
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.2e-59 231.9 145 76.6
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.2e-59 231.9 150 76.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 5.5e-59 231.1 142 77.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 7.2e-59 230.7 127 83.5
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 9.4e-59 230.3 148 75.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 9.4e-59 230.3 137 77.4
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.2e-58 229.9 127 83.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.6e-58 229.6 144 76.4
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.6e-58 229.6 141 76.6
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 4.6e-58 228.0 148 75.7
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.0e-57 226.9 147 74.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.0e-57 226.9 139 78.4
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.0e-57 226.9 144 75.0
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.0e-57 226.9 137 77.4
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.4e-57 226.5 147 74.1
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.4e-57 226.5 147 74.1
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.4e-57 226.5 144 74.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.4e-57 226.5 145 75.9
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 154 72.7
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.3e-57 225.7 134 81.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.9e-57 224.9 126 81.7
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.9e-57 224.9 126 81.7
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.9e-57 224.9 126 81.7
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 5.1e-57 224.6 144 74.3
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 5.1e-57 224.6 128 81.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 6.7e-57 224.2 136 77.2
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 5.7e-56 221.1 130 78.5
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 7.4e-56 220.7 129 79.8
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 9.7e-56 220.3 134 79.9
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.2e-55 219.2 129 79.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.8e-55 218.8 152 69.7
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 3.7e-55 218.4 135 74.8
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.8e-55 218.0 139 74.1
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.4e-54 215.7 112 86.6
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 3.1e-54 215.3 129 76.7
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 5.3e-54 214.5 145 69.7
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.5e-53 213.0 144 70.8
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.0e-53 212.6 128 75.8
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 4.5e-53 211.5 129 77.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 7.7e-53 210.7 136 76.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 7.7e-53 210.7 170 60.6
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 7.7e-53 210.7 170 60.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 6.5e-52 207.6 141 73.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.1e-51 206.8 127 73.2
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.9e-51 206.1 151 68.2
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.2e-50 203.4 142 66.9
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.1e-50 202.6 174 64.4
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.0e-49 200.3 155 71.0
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.0e-49 200.3 148 67.6
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.1e-48 196.8 148 69.6
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.0e-48 196.1 159 69.2
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.0e-48 196.1 104 82.7
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.7e-48 194.5 104 81.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.7e-47 193.0 142 64.1
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.1e-46 188.3 105 80.0
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 9.1e-46 187.2 109 84.4
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 2.0e-45 186.0 123 68.3
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.0e-44 183.7 142 66.9
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.0e-41 173.7 110 76.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.8e-41 172.9 89 83.1
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.0e-40 169.5 112 72.3
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 9.7e-40 167.2 94 87.2
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 4.8e-39 164.9 150 60.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.1e-38 161.8 114 75.4
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 7.2e-35 151.0 78 80.8
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-33 146.7 98 76.5
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.0e-28 130.6 84 81.0
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.8e-28 128.6 104 60.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 1.2e-26 123.6 61 85.2
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 8.0e-26 120.9 152 44.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.8e-22 109.8 311 29.6
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.1e-19 100.5 73 60.3
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 3.6e-18 95.5 77 74.0
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 4.7e-18 95.1 52 82.7
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.3e-15 87.0 57 77.2
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-13 80.5 52 65.4
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.9e-11 73.2 39 87.2
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.6e-10 70.1 42 73.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.0e-09 67.4 40 67.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.8e-09 66.6 49 63.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 2.6e-08 62.8 46 65.2
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.4e-07 58.2 53 49.1
Dinv35020 Davidia involucrata HOM05D005035 ORTHO05D006141 1.1e-06 57.4 44 65.9


User provided reference genes

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