Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.9e-71 270.8 138 100.0
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.5e-55 218.4 138 79.0
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.5e-55 218.4 138 79.0
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 4.5e-55 218.0 139 82.7
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 4.5e-55 218.0 139 82.7
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 7.7e-55 217.2 138 79.7
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.7e-54 216.1 137 79.6
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.7e-54 216.1 138 79.7
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.7e-54 216.1 138 79.7
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.2e-54 215.7 136 77.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.2e-54 215.7 137 78.8
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 2.9e-54 215.3 137 78.8
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 3.8e-54 214.9 136 78.7
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 3.8e-54 214.9 137 78.8
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 6.5e-54 214.2 138 78.3
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 6.5e-54 214.2 137 78.1
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 8.5e-54 213.8 138 76.1
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.1e-53 213.4 134 80.6
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.5e-53 213.0 136 77.2
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.9e-53 212.6 137 77.4
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.9e-53 212.6 139 75.5
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.5e-53 212.2 138 77.5
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.2e-53 211.8 134 79.9
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 5.5e-53 211.1 136 77.2
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 7.2e-53 210.7 138 75.4
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 9.4e-53 210.3 134 78.4
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.2e-52 209.9 140 73.6
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.2e-52 209.9 137 75.2
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.6e-52 209.5 136 75.7
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 1.6e-52 209.5 136 76.5
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.6e-52 209.5 136 75.7
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.1e-52 209.1 138 75.4
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.1e-52 209.1 136 74.3
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.7e-52 208.8 136 75.7
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.7e-52 208.0 136 77.2
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.7e-52 208.0 132 80.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 6.1e-52 207.6 138 73.9
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 6.1e-52 207.6 137 74.5
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 8.0e-52 207.2 138 73.9
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-51 206.8 140 72.1
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.0e-51 206.8 133 75.9
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 1.0e-51 206.8 134 77.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.0e-51 206.8 137 75.9
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.0e-51 206.8 133 75.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.4e-51 206.5 139 73.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.4e-51 206.5 137 75.9
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.4e-51 206.5 136 74.3
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.8e-51 206.1 131 76.3
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.8e-51 206.1 136 76.5
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.3e-51 205.7 133 78.2
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.3e-51 205.7 137 73.0
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 3.0e-51 205.3 137 73.7
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 3.0e-51 205.3 136 73.5
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 3.9e-51 204.9 133 77.4
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 5.2e-51 204.5 139 72.7
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 6.7e-51 204.1 138 76.8
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.1e-50 203.4 133 76.7
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.1e-50 203.4 137 73.7
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.1e-50 203.4 133 74.4
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.1e-50 203.4 136 73.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.0e-50 202.6 136 75.0
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 2.0e-50 202.6 137 75.9
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 2.6e-50 202.2 136 74.3
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.3e-50 201.8 136 74.3
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.4e-50 201.4 136 75.0
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 5.7e-50 201.1 136 73.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 5.7e-50 201.1 136 73.5
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 7.4e-50 200.7 138 71.0
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 7.4e-50 200.7 132 72.7
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 9.7e-50 200.3 134 74.6
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 9.7e-50 200.3 132 76.5
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 1.3e-49 199.9 147 72.1
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.2e-49 199.1 133 72.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.8e-49 198.7 134 74.6
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 4.8e-49 198.0 139 72.7
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 6.3e-49 197.6 132 76.5
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 6.3e-49 197.6 132 78.0
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 8.2e-49 197.2 136 72.1
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.1e-48 196.8 133 71.4
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 5.3e-48 194.5 131 75.6
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 7.0e-48 194.1 136 71.3
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.1e-48 193.7 138 71.7
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.2e-47 193.4 136 73.5
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.2e-47 193.4 133 72.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 4.5e-47 191.4 136 70.6
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.3e-46 189.9 133 72.9
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.7e-46 189.5 143 67.8
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 5.0e-46 188.0 131 69.5
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.1e-45 186.8 138 69.6
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 8.0e-44 180.6 138 67.4
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.0e-43 178.7 146 63.7
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.0e-43 178.7 146 63.7
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.0e-43 178.7 146 63.7
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.0e-43 178.7 146 63.7
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.2e-42 176.8 130 69.2
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 2.8e-41 172.2 115 73.0
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 2.8e-41 172.2 115 73.0
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 2.8e-41 172.2 115 73.0
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 6.3e-41 171.0 107 75.7
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 8.3e-41 170.6 107 74.8
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 8.3e-41 170.6 115 72.2
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 8.3e-41 170.6 115 72.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 8.3e-41 170.6 129 67.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 8.3e-41 170.6 129 67.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-40 170.2 109 73.4
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.1e-40 170.2 109 74.3
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 1.4e-40 169.9 119 67.2
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.8e-40 169.5 121 66.9
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 2.4e-40 169.1 107 74.8
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 2.4e-40 169.1 119 73.1
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 3.1e-40 168.7 109 73.4
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 5.4e-40 167.9 119 67.2
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 7.0e-40 167.5 109 72.5
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 9.1e-40 167.2 136 63.2
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 2.0e-39 166.0 133 66.2
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.5e-39 165.2 107 72.0
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 3.5e-39 165.2 125 64.8
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 6.5e-38 161.0 108 72.2
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.1e-37 160.2 93 77.4
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 7.2e-37 157.5 113 71.7
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.3e-35 152.5 100 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 5.7e-34 147.9 126 58.7
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 7.7e-31 137.5 137 54.7
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 2.3e-30 136.0 118 64.4
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.9e-29 132.9 80 75.0
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 4.2e-29 131.7 132 55.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.8e-27 126.3 119 55.5
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 2.9e-25 119.0 106 56.6
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.7e-23 112.5 81 77.8
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 1.9e-21 106.3 73 75.3
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.5e-21 105.9 72 63.9
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 7.3e-21 104.4 59 74.6
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 9.5e-21 104.0 136 48.5
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.1e-20 102.8 123 43.9
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 4.0e-19 98.6 73 71.2
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 6.8e-19 97.8 151 40.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 9.8e-18 94.0 76 61.8
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.3e-17 93.6 70 64.3
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.7e-17 93.2 81 61.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.7e-17 93.2 54 74.1
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 2.2e-17 92.8 115 43.5
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.3e-14 83.6 78 57.7
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 3.9e-14 82.0 55 72.7
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.5e-13 79.3 107 41.1
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 4.0e-11 72.0 56 60.7
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 1.7e-09 66.6 140 36.4
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 4.9e-09 65.1 76 50.0
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 6.4e-09 64.7 81 44.4


User provided reference genes

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