Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 3.0e-233 811.6 450 100.0
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 3.1e-145 519.2 375 70.1
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 2.6e-144 516.2 377 70.3
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 4.3e-139 498.8 379 67.3
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 6.2e-138 495.0 377 66.8
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 3.1e-137 492.7 455 58.5
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 7.1e-134 481.5 377 66.0
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.3e-132 477.2 372 65.3
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 2.5e-131 473.0 376 63.3
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 3.3e-131 472.6 376 64.9
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 4.3e-131 472.2 398 62.8
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 2.1e-130 469.9 374 65.2
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 3.7e-130 469.2 377 65.0
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 6.2e-130 468.4 426 60.3
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 6.2e-130 468.4 376 65.4
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.2e-128 464.2 377 63.9
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.2e-128 464.2 378 62.7
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 2.6e-128 463.0 450 61.3
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 3.4e-128 462.6 384 64.6
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.3e-127 460.7 356 68.8
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.7e-127 460.3 376 63.3
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.9e-127 459.5 375 63.7
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 3.8e-127 459.1 376 63.3
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.8e-127 459.1 377 63.1
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 6.5e-127 458.4 376 63.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 8.4e-127 458.0 377 63.1
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.1e-126 457.6 371 64.7
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 4.2e-126 455.7 371 63.6
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.6e-125 453.8 370 63.2
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 4.6e-125 452.2 370 63.0
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 1.0e-124 451.1 347 66.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.3e-124 450.7 374 62.0
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.1e-123 447.6 375 63.7
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.5e-123 447.2 358 66.5
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 2.5e-123 446.4 354 65.0
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 3.3e-123 446.0 372 63.7
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 4.3e-123 445.7 348 67.5
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 5.7e-123 445.3 378 62.2
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 3.7e-122 442.6 372 63.7
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 4.8e-122 442.2 383 63.7
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 6.3e-122 441.8 451 54.3
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.1e-121 441.0 375 61.9
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.8e-121 440.3 372 62.1
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 3.1e-121 439.5 372 62.9
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 4.1e-121 439.1 383 62.9
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 5.3e-121 438.7 363 63.6
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 2.6e-120 436.4 381 62.5
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 5.0e-119 432.2 376 61.7
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 5.0e-119 432.2 371 61.7
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 6.5e-119 431.8 371 61.5
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 1.4e-118 430.6 376 61.2
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.2e-117 427.6 349 64.5
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 2.1e-117 426.8 381 61.2
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.6e-117 426.0 377 59.7
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 4.6e-117 425.6 381 61.2
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 4.6e-117 425.6 388 60.1
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 4.6e-117 425.6 378 59.5
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 7.9e-117 424.9 375 60.5
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 1.4e-116 424.1 341 64.8
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.8e-116 423.7 378 59.8
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.8e-116 423.7 373 61.4
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 2.3e-116 423.3 380 60.8
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 3.0e-116 422.9 380 58.7
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 6.7e-116 421.8 386 60.6
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 8.8e-116 421.4 381 60.6
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 8.8e-116 421.4 384 60.2
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 1.5e-115 420.6 380 60.0
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 5.7e-115 418.7 377 59.4
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 7.4e-115 418.3 352 61.9
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 2.2e-114 416.8 377 59.9
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 3.7e-114 416.0 377 59.7
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 3.7e-114 416.0 381 58.5
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 4.8e-114 415.6 354 63.3
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 8.2e-114 414.8 376 57.7
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 8.2e-114 414.8 352 61.9
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 8.2e-114 414.8 333 62.2
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.4e-113 414.1 370 59.5
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.4e-113 414.1 383 59.3
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 9.1e-113 411.4 378 59.3
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 9.1e-113 411.4 385 59.2
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 1.2e-112 411.0 376 59.3
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.6e-112 409.8 345 63.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.9e-112 408.7 370 59.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 7.7e-112 408.3 353 61.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.0e-111 407.9 348 62.1
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 1.3e-111 407.5 387 57.4
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 2.9e-111 406.4 354 61.3
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 3.8e-111 406.0 352 60.8
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.8e-111 406.0 346 63.0
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 1.4e-110 404.1 372 59.4
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.8e-108 397.1 313 66.1
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 1.8e-105 387.1 294 67.7
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 7.0e-89 332.0 375 52.3
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 5.9e-88 328.9 367 51.8
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 2.5e-86 323.6 382 50.0
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 6.8e-84 315.5 369 48.8
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 5.4e-81 305.8 242 66.1
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 1.7e-79 300.8 350 51.1
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 2.9e-79 300.1 269 59.9
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.9e-71 273.5 214 67.3
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 4.4e-67 259.6 204 65.7
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 9.8e-67 258.5 370 43.5
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 3.2e-65 253.4 212 64.2
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 1.5e-62 244.6 355 43.1
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 7.5e-59 232.3 356 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 2.3e-55 220.7 215 52.6
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 3.4e-51 206.8 353 38.2
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 1.6e-45 188.0 174 58.0
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 4.3e-38 163.3 181 51.9
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.5e-27 128.3 271 33.6
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 1.6e-24 118.2 73 76.7
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.9e-22 111.3 93 58.1
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 2.5e-22 110.9 102 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.0e-18 99.0 104 49.0
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 7.9e-16 89.4 176 40.9
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.9e-14 84.7 128 40.6
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 1.6e-13 81.6 277 26.4
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 3.1e-12 77.4 366 25.7
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 2.2e-10 71.2 119 39.5


User provided reference genes

Program Settings