Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 0.0e+00 1243.8 633 100.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.0e-259 899.0 603 76.1
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.7e-256 888.6 611 73.8
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-249 866.3 613 70.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.9e-249 865.9 614 71.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 2.5e-249 865.5 612 72.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 7.2e-249 864.0 610 69.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 7.2e-249 864.0 612 70.6
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-248 863.2 616 70.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.7e-248 862.1 614 71.3
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 6.1e-248 860.9 616 71.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.6e-246 855.5 615 70.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.3e-246 855.1 613 71.1
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 4.4e-246 854.7 615 69.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.3e-245 853.2 621 70.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.7e-245 851.7 624 70.0
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 9.1e-244 847.0 620 69.0
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.5e-243 845.1 615 71.1
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.5e-243 844.7 614 70.7
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 7.7e-243 844.0 612 69.4
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 5.0e-242 841.3 614 68.9
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 5.0e-242 841.3 614 69.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.5e-242 840.9 614 70.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 8.5e-242 840.5 611 67.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.1e-241 840.1 618 69.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.5e-241 839.7 611 69.9
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 4.2e-241 838.2 615 71.1
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.6e-240 835.1 620 69.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 3.6e-240 835.1 617 70.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 3.6e-240 835.1 614 68.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.8e-239 832.8 614 69.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.3e-239 832.4 614 68.4
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.0e-239 832.0 614 69.1
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.0e-239 832.0 614 69.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.0e-239 832.0 614 69.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.4e-238 828.2 611 68.2
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.8e-237 825.5 614 69.2
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.4e-236 823.2 619 67.5
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.1e-236 821.6 617 67.6
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 7.0e-236 820.8 627 68.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.6e-235 819.7 612 67.3
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.5e-235 818.1 690 61.6
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.3e-234 816.6 619 67.0
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.8e-234 815.1 618 66.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 9.4e-233 810.4 616 68.0
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.0e-231 805.4 621 66.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.0e-231 805.4 612 66.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.8e-231 803.9 612 66.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.8e-231 803.9 617 66.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.2e-230 803.5 617 65.8
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.7e-230 801.2 620 66.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 7.5e-230 800.8 618 66.8
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-229 800.0 612 66.5
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.7e-229 799.7 616 66.6
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.8e-229 798.1 612 66.3
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 3.1e-228 795.4 613 66.1
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.0e-227 792.7 611 65.0
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 3.5e-227 792.0 617 66.1
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.3e-226 790.0 611 65.1
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.2e-226 789.3 611 64.5
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.5e-226 787.3 745 57.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.9e-225 786.2 612 64.1
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.9e-225 786.2 610 65.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.7e-224 782.3 612 63.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.7e-224 782.3 570 69.8
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 6.1e-224 781.2 613 63.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 3.0e-223 778.9 612 62.7
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 5.2e-223 778.1 565 69.4
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.2e-222 776.9 612 64.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.2e-222 776.9 612 64.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.0e-222 776.2 612 63.9
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.6e-222 775.8 612 64.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 3.4e-222 775.4 612 63.9
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.4e-222 775.4 612 64.9
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.7e-221 773.1 627 63.6
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.4e-220 770.0 612 63.6
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.8e-220 769.6 611 65.5
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.4e-220 769.2 613 63.8
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.5e-219 765.0 613 63.3
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.0e-218 763.8 611 64.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.3e-218 763.5 575 68.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.6e-216 756.5 567 66.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.6e-211 740.0 551 68.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 7.8e-211 737.6 612 62.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.3e-210 736.1 547 69.1
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.4e-207 726.9 595 62.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.6e-198 696.0 610 59.2
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.3e-193 678.7 500 68.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 6.2e-192 674.9 622 58.7
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.0e-186 656.0 623 55.5
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.1e-175 620.9 612 55.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.3e-173 614.0 683 49.2
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 7.6e-166 588.2 526 58.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.2e-164 582.8 686 50.3
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-156 557.0 498 59.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.8e-149 532.7 382 69.6
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 8.4e-149 531.6 354 73.7
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.6e-147 526.2 506 54.5
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.7e-141 507.3 377 67.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 4.8e-128 462.6 360 66.7
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.6e-118 431.0 436 55.0
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 2.7e-118 430.3 365 63.8
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-116 422.9 389 59.4
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.1e-107 392.5 257 76.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 5.2e-106 389.4 652 39.4
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.8e-103 380.9 323 60.7
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.1e-103 379.8 257 72.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.3e-100 369.0 256 68.8
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 5.6e-92 342.8 244 69.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.4e-87 328.2 231 70.1
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 4.4e-81 306.6 644 34.9
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 3.6e-75 287.0 179 77.1
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-65 254.6 221 58.8
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-63 246.1 211 60.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 5.4e-55 219.9 169 68.0
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 2.1e-51 208.0 157 66.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.4e-47 195.3 110 82.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.1e-45 186.8 111 82.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-44 184.5 111 82.0
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-42 178.3 111 78.4
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-41 174.5 104 78.8
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-40 171.8 109 74.3
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.0e-37 162.5 105 71.4
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-36 156.0 121 63.6
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-34 152.5 135 59.3
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 5.9e-33 146.7 99 72.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-30 138.3 127 57.5
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.0e-29 134.4 513 25.5
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.7e-27 127.5 82 73.2
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 8.2e-27 126.3 82 73.2
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 3.1e-26 124.4 134 49.3
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-24 117.9 72 76.4
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-24 116.7 69 82.6
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-23 114.8 95 60.0
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.5e-23 114.8 95 60.0
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-20 104.4 68 70.6
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-20 102.8 66 72.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.2e-19 99.8 83 55.4
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.6e-14 84.3 141 36.9
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 9.7e-12 76.3 182 30.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.3e-11 75.9 182 29.7
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-11 75.5 41 80.5
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-11 74.7 40 87.5
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-11 74.7 55 67.3
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.7e-11 74.3 185 29.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 8.2e-11 73.2 177 26.6
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 8.2e-11 73.2 182 29.1
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.1e-10 72.8 185 27.6
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.1e-10 72.8 41 90.2
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 29.1
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.8e-10 72.0 196 26.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 29.7
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 29.7
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 4.1e-10 70.9 182 29.1
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.1e-10 70.9 182 28.6
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 4.1e-10 70.9 182 29.1
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 4.1e-10 70.9 182 28.6
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 5.3e-10 70.5 182 29.1
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.3e-10 70.5 182 27.5
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 9.1e-10 69.7 182 29.1
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.2e-09 69.3 182 28.0
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-09 69.3 51 62.7
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.6e-09 68.9 182 28.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.6e-09 68.9 174 27.6
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.0e-09 68.6 182 27.5
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 2.6e-09 68.2 174 27.0
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 3.5e-09 67.8 182 27.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 3.5e-09 67.8 41 70.7
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 4.5e-09 67.4 181 29.3
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 5.9e-09 67.0 182 27.5
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 5.9e-09 67.0 182 27.5
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 7.7e-09 66.6 182 27.5
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.0e-08 66.2 182 27.5
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.7e-08 65.5 182 27.5
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.8e-08 64.3 183 29.0
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.8e-08 64.3 182 26.9
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.5e-07 62.4 143 30.1
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 4.2e-07 60.8 193 25.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 4.2e-07 60.8 46 67.4
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 4.2e-07 60.8 183 26.8
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 2.1e-06 58.5 159 27.7
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 4.7e-06 57.4 151 27.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 8.0e-06 56.6 201 23.9


User provided reference genes

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