Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-161 572.8 287 100.0
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.1e-98 364.0 285 63.5
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 7.6e-97 357.8 284 60.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.7e-96 356.7 284 61.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 3.0e-93 345.9 284 58.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.1e-92 344.0 287 57.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.9e-92 343.2 282 58.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.3e-92 342.4 283 60.1
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 4.3e-92 342.0 284 58.5
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 7.3e-92 341.3 284 58.5
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 8.1e-91 337.8 288 56.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.1e-90 337.4 283 60.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 9.0e-90 334.3 285 56.8
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 4.5e-89 332.0 280 58.6
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 5.8e-89 331.6 289 55.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 3.8e-88 328.9 285 54.4
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.9e-88 328.6 288 55.9
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.4e-87 327.0 288 58.0
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.6e-86 323.6 280 55.0
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.1e-86 323.2 287 54.4
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.5e-86 322.4 287 54.0
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.0e-85 320.9 284 55.6
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.8e-85 320.1 284 55.3
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.3e-85 319.7 284 55.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.0e-85 319.3 283 54.8
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.0e-85 319.3 283 53.4
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.7e-85 318.2 284 56.7
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.5e-84 317.0 287 53.7
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.5e-84 317.0 279 53.0
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.5e-84 317.0 283 53.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.9e-84 316.6 283 54.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.9e-84 316.6 291 55.7
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.3e-84 315.8 283 54.4
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 7.4e-84 314.7 286 52.1
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.3e-83 313.9 283 53.0
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.1e-83 313.2 283 51.9
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.1e-83 313.2 287 55.1
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 6.2e-83 311.6 285 53.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.1e-82 310.8 279 52.7
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.8e-82 310.1 287 54.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.8e-82 310.1 283 53.7
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 2.4e-82 309.7 288 54.9
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.4e-82 309.7 286 53.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 4.0e-82 308.9 278 53.6
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.2e-81 307.4 282 52.1
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.6e-81 306.2 284 52.5
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 3.4e-81 305.8 288 52.1
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 4.5e-81 305.4 285 53.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.5e-81 305.4 283 51.6
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 5.8e-81 305.1 289 53.6
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 4.9e-80 302.0 286 51.4
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.4e-79 300.4 256 56.6
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.4e-79 300.4 284 53.2
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.9e-79 300.1 282 50.4
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.5e-79 299.7 282 51.1
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 2.5e-79 299.7 290 53.4
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 4.2e-79 298.9 290 53.4
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 5.5e-79 298.5 282 52.8
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 7.1e-79 298.1 286 50.3
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 9.3e-79 297.7 286 51.7
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.2e-78 297.4 280 52.5
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.1e-78 296.6 283 53.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 7.9e-78 294.7 287 52.3
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 7.9e-78 294.7 284 52.8
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.3e-77 293.9 285 52.3
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.3e-77 293.9 282 49.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.8e-77 293.5 287 51.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.3e-77 293.1 283 53.4
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.3e-77 293.1 280 52.5
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.7e-77 291.6 259 55.6
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.5e-76 290.4 281 51.2
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.5e-76 289.7 278 50.7
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.5e-76 289.7 283 51.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 3.3e-76 289.3 219 64.4
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 3.3e-76 289.3 283 51.2
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 9.6e-76 287.7 283 50.5
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 9.6e-76 287.7 283 50.5
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.1e-75 286.6 259 53.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 6.2e-75 285.0 283 49.5
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 6.2e-75 285.0 282 50.0
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.8e-74 283.5 283 49.5
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.4e-74 283.1 258 51.6
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.4e-74 283.1 285 52.6
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.0e-74 282.3 283 49.1
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.6e-73 279.6 284 52.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.6e-73 279.6 288 52.1
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.3e-72 277.3 339 44.8
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.7e-72 276.9 279 48.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.1e-71 274.2 292 48.3
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 6.0e-70 268.5 283 47.7
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.3e-68 262.7 289 47.8
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.7e-67 259.2 287 46.7
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 9.0e-66 254.6 283 44.9
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.2e-65 254.2 286 46.5
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 3.4e-65 252.7 278 46.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 7.7e-65 251.5 295 44.7
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.7e-64 250.4 282 44.7
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 3.8e-64 249.2 289 43.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 7.2e-63 245.0 180 63.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.4e-61 240.7 283 44.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.0e-61 239.6 266 50.4
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.5e-60 236.5 208 57.7
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 8.2e-59 231.5 287 43.6
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.5e-39 167.5 219 43.4
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 4.1e-34 149.4 278 30.9
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 5.3e-34 149.1 299 30.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 8.5e-32 141.7 146 49.3
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.3e-23 113.2 136 46.3
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.6e-22 110.9 99 51.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.6e-22 109.8 269 28.3
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 3.0e-21 106.7 281 27.4
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.5e-20 104.4 139 42.4
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.4e-20 102.8 78 57.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.8e-19 100.1 76 57.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 4.5e-17 92.8 140 36.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 7.5e-12 75.5 102 37.3
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.7e-09 67.0 138 27.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.1e-06 57.4 307 21.5
AagrBONN_evm.TU.Sc2ySwM_228.892 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.6e-06 56.6 136 27.9


User provided reference genes

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