Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 3.9e-86 321.2 143 100.0
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 8.8e-70 266.9 143 83.2
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 1.1e-64 250.0 146 77.4
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 2.9e-57 225.3 144 69.4
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 2.5e-56 222.2 140 67.9
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 4.2e-56 221.5 144 66.0
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 5.5e-56 221.1 137 67.9
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 2.7e-55 218.8 110 80.0
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 4.0e-54 214.9 140 70.0
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 6.7e-54 214.2 142 64.8
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 2.0e-53 212.6 140 70.0
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 2.0e-53 212.6 137 67.9
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.0e-53 212.6 142 64.8
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 3.3e-53 211.8 143 63.6
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 4.4e-53 211.5 145 64.8
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 5.7e-53 211.1 129 69.0
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.7e-52 209.5 141 66.7
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 1.7e-52 209.5 141 66.7
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 3.7e-52 208.4 141 66.0
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 3.7e-52 208.4 137 64.2
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 3.7e-52 208.4 139 66.2
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 4.8e-52 208.0 144 64.6
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 6.3e-52 207.6 140 67.9
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 2.4e-51 205.7 137 65.7
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 2.4e-51 205.7 137 65.7
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 2.4e-51 205.7 137 65.7
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 2.4e-51 205.7 137 65.7
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 2.4e-51 205.7 137 65.7
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 2.4e-51 205.7 139 67.6
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 2.4e-51 205.7 142 63.4
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 2.4e-51 205.7 142 63.4
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 3.1e-51 205.3 134 64.9
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 4.1e-51 204.9 137 65.0
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 1.2e-50 203.4 135 66.7
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 1.6e-50 203.0 139 64.0
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 3.5e-50 201.8 137 65.7
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 4.5e-50 201.4 129 65.1
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 5.9e-50 201.1 139 63.3
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 7.7e-50 200.7 129 64.3
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 1.0e-49 200.3 110 74.5
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 1.0e-49 200.3 129 65.9
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.3e-49 199.9 137 63.5
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 1.7e-49 199.5 143 64.3
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 1.7e-49 199.5 110 74.5
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.7e-49 199.5 143 60.1
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 1.7e-49 199.5 136 62.5
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 2.2e-49 199.1 138 65.2
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 2.2e-49 199.1 129 64.3
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 2.2e-49 199.1 137 64.2
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 3.8e-49 198.4 145 59.3
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 5.0e-49 198.0 138 64.5
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 5.0e-49 198.0 138 64.5
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 5.0e-49 198.0 139 63.3
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 6.5e-49 197.6 137 62.8
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 6.5e-49 197.6 110 71.8
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 6.5e-49 197.6 137 62.0
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 1.9e-48 196.1 141 62.4
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 1.9e-48 196.1 105 74.3
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 3.2e-48 195.3 110 70.9
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 9.4e-48 193.7 139 62.6
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 1.2e-47 193.4 137 66.4
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.6e-47 193.0 137 60.6
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 1.6e-47 193.0 138 60.9
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 2.1e-47 192.6 126 63.5
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 8.0e-47 190.7 140 59.3
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 1.8e-46 189.5 117 69.2
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 3.0e-46 188.7 142 59.9
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 3.0e-46 188.7 186 47.3
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 4.0e-46 188.3 144 59.0
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 4.0e-46 188.3 137 59.9
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 4.0e-46 188.3 137 60.6
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 5.2e-46 188.0 132 62.9
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 5.2e-46 188.0 137 59.9
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 6.8e-46 187.6 110 70.0
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 1.2e-45 186.8 138 61.6
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 2.6e-45 185.7 137 62.8
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 3.4e-45 185.3 119 66.4
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.7e-44 183.0 142 56.3
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 2.2e-44 182.6 158 53.8
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 2.2e-44 182.6 142 55.6
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 3.7e-44 181.8 140 57.9
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 4.8e-44 181.4 157 55.4
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 4.8e-44 181.4 137 57.7
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 4.1e-43 178.3 137 58.4
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 7.0e-43 177.6 119 59.7
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 3.5e-42 175.3 136 58.1
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 2.3e-41 172.6 138 59.4
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 5.0e-41 171.4 179 47.5
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 5.0e-41 171.4 119 58.0
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 6.5e-41 171.0 119 58.0
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 6.5e-41 171.0 138 52.2
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.9e-40 169.5 91 74.7
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 5.5e-40 167.9 154 51.3
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 1.2e-39 166.8 110 60.0
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 4.7e-39 164.9 116 65.5
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.2e-37 160.2 141 54.6
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 2.0e-37 159.5 123 59.3
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 4.4e-37 158.3 84 75.0
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.7e-36 156.4 118 51.7
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 2.8e-36 155.6 149 51.7
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 8.3e-36 154.1 111 61.3
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.1e-35 153.7 119 54.6
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 1.4e-35 153.3 93 76.3
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 1.4e-35 153.3 121 54.5
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 1.8e-35 152.9 141 53.2
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 7.0e-35 151.0 93 75.3
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 1.6e-34 149.8 84 70.2
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 4.0e-30 135.2 91 61.5
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 4.4e-29 131.7 90 64.4
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 3.2e-27 125.6 100 60.0
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 4.1e-27 125.2 96 61.5
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 7.0e-27 124.4 90 64.4
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 1.6e-26 123.2 94 58.5
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.5e-24 115.9 92 57.6
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.5e-24 115.9 92 57.6
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 1.2e-23 113.6 95 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 7.5e-21 104.4 90 46.7
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 4.3e-16 88.6 59 59.3
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 5.6e-16 88.2 95 44.2
MBI18_g17001_MAGBIO Magnolia biondii HOM05D006296 ORTHO05D007777 4.4e-13 78.6 61 60.7
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 2.7e-10 69.3 64 54.7
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 1.7e-09 66.6 33 75.8
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 2.3e-09 66.2 38 71.1
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 4.3e-08 62.0 64 48.4


User provided reference genes

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