Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.8e-262 908.7 455 100.0
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 5.6e-179 631.3 443 69.1
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.5e-171 606.7 455 65.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 2.8e-170 602.4 476 63.4
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 6.2e-170 601.3 444 65.8
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.4e-169 600.1 444 65.5
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 9.0e-169 597.4 443 66.4
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.0e-169 597.4 460 65.7
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 5.8e-168 594.7 478 61.5
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.7e-167 593.2 440 63.9
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.9e-167 592.4 442 65.4
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 4.9e-167 591.7 436 64.7
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 4.9e-167 591.7 449 64.4
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.1e-166 590.5 453 63.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.1e-166 590.5 431 67.3
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 2.5e-166 589.3 440 66.4
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 4.6e-165 585.1 444 63.5
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 4.6e-165 585.1 441 65.1
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 6.0e-165 584.7 441 65.3
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.0e-164 582.4 447 63.1
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 3.0e-164 582.4 436 63.8
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.5e-163 579.3 434 65.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 1.3e-162 577.0 444 64.0
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.6e-162 576.6 444 64.0
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.2e-162 576.2 449 63.0
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.8e-162 575.9 444 64.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 3.7e-162 575.5 449 63.9
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 8.2e-162 574.3 445 64.0
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 3.1e-161 572.4 455 62.4
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 5.3e-161 571.6 453 60.9
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 5.3e-161 571.6 448 62.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 6.9e-161 571.2 446 64.3
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.2e-160 570.5 440 62.5
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 1.2e-160 570.5 449 63.5
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.5e-160 570.1 432 64.4
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 2.6e-160 569.3 430 64.2
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 2.6e-160 569.3 437 64.3
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 3.4e-160 568.9 435 63.7
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.3e-159 567.0 444 63.1
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 6.5e-159 564.7 436 65.6
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.5e-159 564.7 443 63.2
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.5e-159 564.3 442 62.2
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 8.5e-159 564.3 411 65.9
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.5e-158 562.8 435 62.8
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.5e-158 562.8 443 63.0
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 7.2e-158 561.2 472 60.2
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.6e-157 560.1 436 63.1
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 2.1e-157 559.7 447 62.6
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 5.1e-156 555.1 449 61.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.1e-155 553.9 449 62.1
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 2.2e-154 549.7 433 61.9
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 8.2e-154 547.7 431 61.5
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 2.4e-153 546.2 441 61.5
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 4.1e-153 545.4 428 61.7
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 5.3e-153 545.0 454 60.8
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.2e-152 543.9 423 63.6
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 2.6e-152 542.7 444 61.5
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 3.8e-151 538.9 442 60.9
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 5.5e-150 535.0 444 59.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.6e-149 533.5 431 60.3
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.1e-149 533.1 434 60.4
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.7e-149 532.7 457 59.7
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 3.6e-149 532.3 436 60.3
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 7.9e-149 531.2 457 58.9
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 5.1e-148 528.5 437 60.6
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 5.1e-148 528.5 451 60.8
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 1.5e-147 526.9 445 60.4
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 5.7e-147 525.0 452 60.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.7e-146 523.5 408 62.7
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 3.7e-146 522.3 452 60.8
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 3.1e-145 519.2 449 60.1
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 5.3e-145 518.5 399 63.2
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 4.7e-141 505.4 444 58.1
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.0e-140 502.7 466 57.3
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 5.2e-140 501.9 449 57.0
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.5e-136 488.8 455 56.5
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 1.2e-133 480.7 530 50.0
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 5.2e-132 475.3 465 52.3
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 8.8e-132 474.6 445 55.5
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 9.7e-131 471.1 446 51.8
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 6.3e-130 468.4 427 52.9
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 8.2e-130 468.0 432 54.6
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.0e-128 463.4 455 56.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 6.5e-127 458.4 358 62.6
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 9.1e-121 438.0 327 65.4
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.6e-117 427.2 315 63.5
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 9.8e-115 417.9 314 64.0
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.7e-114 417.2 347 59.9
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.4e-113 413.3 441 48.1
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.0e-111 407.9 391 55.2
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 3.8e-111 406.0 312 62.5
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 6.1e-109 398.7 360 53.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 8.3e-106 388.3 318 60.7
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 7.8e-104 381.7 369 49.3
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 4.7e-101 372.5 428 46.3
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 1.8e-100 370.5 304 59.5
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 1.2e-99 367.9 303 59.4
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 4.6e-96 355.9 309 57.9
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.5e-94 350.1 229 70.7
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 7.3e-94 348.6 411 45.7
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 2.3e-92 343.6 305 56.7
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.3e-87 327.0 400 45.8
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.5e-78 297.7 350 47.4
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.3e-71 274.6 435 39.3
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.2e-67 261.5 233 57.1
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 9.9e-67 258.5 213 61.0
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.4e-65 253.8 175 67.4
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.8e-61 239.6 212 58.0
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 5.8e-59 232.6 212 54.7
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 2.1e-53 214.2 206 52.9
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.2e-48 198.4 132 72.0
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 5.1e-47 193.0 135 67.4
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.2e-43 181.8 229 43.2
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.2e-41 172.6 176 49.4
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.9e-33 147.9 97 75.3
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 2.5e-33 147.5 144 55.6
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.8e-31 141.4 134 57.5
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.2e-27 128.6 131 54.2
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 8.8e-23 112.5 105 47.6
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 3.7e-21 107.1 414 26.3
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.3e-18 98.6 446 24.0
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.2e-17 94.0 369 23.8
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.6e-16 91.7 83 57.8
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 1.2e-14 85.5 141 38.3
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 9.7e-14 82.4 58 72.4
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.7e-13 81.6 389 23.9
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 4.7e-08 63.5 42 69.0
Pp3c1_26240 Physcomitrium patens HOM05D005800 ORTHO05D007636 4.4e-06 57.0 163 28.2


User provided reference genes

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