Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 2.8e-44 181.4 84 100.0
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 5.0e-33 144.1 84 84.5
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 5.0e-33 144.1 84 84.5
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 5.0e-33 144.1 84 84.5
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 6.6e-33 143.7 84 84.5
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 8.6e-33 143.3 84 84.5
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.1e-32 142.9 84 83.3
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.5e-32 142.5 84 83.3
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.5e-32 142.5 84 83.3
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 2.5e-32 141.7 84 83.3
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 2.5e-32 141.7 84 83.3
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 3.3e-32 141.4 84 82.1
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 82.1
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 82.1
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 4.3e-32 141.0 84 83.3
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 82.1
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 82.1
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 83.3
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 83.3
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 81.0
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.6e-32 140.6 84 82.1
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.3e-32 140.2 84 81.0
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 9.5e-32 139.8 84 82.1
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 9.5e-32 139.8 81 84.0
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 9.5e-32 139.8 81 84.0
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.2e-31 139.4 84 82.1
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.2e-31 139.4 84 82.1
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 82.1
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.6e-31 139.0 83 80.7
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.6e-31 139.0 84 81.0
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 2.1e-31 138.7 84 82.1
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 2.1e-31 138.7 83 80.7
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 2.1e-31 138.7 83 80.7
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 2.8e-31 138.3 84 81.0
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 2.8e-31 138.3 84 81.0
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 2.8e-31 138.3 84 81.0
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 2.8e-31 138.3 84 81.0
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 2.8e-31 138.3 84 81.0
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.6e-31 137.9 84 79.8
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.6e-31 137.9 84 79.8
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 3.6e-31 137.9 84 81.0
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 4.7e-31 137.5 84 79.8
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 4.7e-31 137.5 84 79.8
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 4.7e-31 137.5 84 79.8
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 78.6
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 78.6
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 79.8
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 79.8
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 79.8
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 78.6
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 78.6
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 6.2e-31 137.1 84 81.0
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 8.0e-31 136.7 83 78.3
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 79.8
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 81.0
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 79.8
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 78.6
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 79.8
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 1.1e-30 136.3 84 79.8
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.4e-30 136.0 84 81.0
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.4e-30 136.0 84 81.0
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.4e-30 136.0 84 81.0
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.4e-30 136.0 84 81.0
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 1.8e-30 135.6 84 79.8
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 1.8e-30 135.6 84 78.6
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.3e-30 135.2 84 81.0
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.3e-30 135.2 84 81.0
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 2.3e-30 135.2 83 77.1
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 3.1e-30 134.8 84 79.8
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 3.1e-30 134.8 84 77.4
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 3.1e-30 134.8 84 79.8
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 4.0e-30 134.4 84 79.8
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 4.0e-30 134.4 84 79.8
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 5.2e-30 134.0 84 79.8
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 5.2e-30 134.0 83 77.1
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.2e-30 134.0 84 79.8
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.2e-30 134.0 84 79.8
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 5.2e-30 134.0 81 80.2
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 6.8e-30 133.7 81 80.2
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 6.8e-30 133.7 81 80.2
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 6.8e-30 133.7 84 78.6
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 8.9e-30 133.3 83 75.9
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 8.9e-30 133.3 83 75.9
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 8.9e-30 133.3 83 78.3
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.0e-29 132.1 81 77.8
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 5.8e-29 130.6 81 76.5
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 7.5e-29 130.2 76 82.9
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 7.5e-29 130.2 76 82.9
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 7.5e-29 130.2 76 82.9
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 9.8e-29 129.8 75 84.0
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 9.8e-29 129.8 75 84.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 9.8e-29 129.8 75 84.0
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 1.3e-28 129.4 76 81.6
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 1.3e-28 129.4 76 81.6
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 1.7e-28 129.0 76 81.6
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 2.2e-28 128.6 83 74.7
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 2.2e-28 128.6 75 82.7
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 2.2e-28 128.6 76 81.6
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 2.9e-28 128.3 75 82.7
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 3.7e-28 127.9 81 77.8
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.9e-28 127.5 84 77.4
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 8.3e-28 126.7 76 80.3
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 8.3e-28 126.7 97 68.0
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.4e-27 125.9 76 80.3
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.4e-27 125.9 79 79.7
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.4e-27 125.9 79 79.7
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.9e-27 125.6 75 81.3
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 3.2e-27 124.8 116 59.5
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 3.2e-27 124.8 76 80.3
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 5.4e-27 124.0 81 77.8
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 5.4e-27 124.0 76 78.9
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 5.4e-27 124.0 80 75.0
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 5.4e-27 124.0 77 77.9
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 5.4e-27 124.0 76 78.9
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 7.0e-27 123.6 76 78.9
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 9.2e-27 123.2 79 73.4
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.0e-26 122.1 60 95.0
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 4.6e-26 120.9 79 74.7
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 7.8e-26 120.2 81 71.6
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 7.8e-26 120.2 57 96.5
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 1.3e-25 119.4 61 88.5
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 5.0e-25 117.5 56 98.2
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 6.6e-25 117.1 136 50.7
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 4.3e-24 114.4 57 89.5
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.1e-23 110.2 53 92.5
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.1e-23 110.2 53 92.5
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.2e-22 107.5 53 88.7
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 5.2e-22 107.5 84 66.7
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 3.4e-21 104.8 65 76.9
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 1.4e-19 99.4 132 45.5
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 1.7e-17 92.4 84 64.3
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 6.2e-15 84.0 54 75.9
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 6.2e-15 84.0 54 75.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 5.2e-14 80.9 46 80.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 6.8e-14 80.5 88 50.0
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 7.6e-13 77.0 75 50.7
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 1.7e-12 75.9 74 47.3
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.1e-11 73.2 54 70.4
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.1e-10 68.9 45 73.3
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.5e-10 68.2 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.5e-10 68.2 32 96.9
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 4.6e-10 67.8 40 77.5
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 1.0e-09 66.6 44 72.7
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.0e-09 66.6 44 72.7
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 3.9e-09 64.7 44 70.5
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 5.1e-09 64.3 32 90.6
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 8.7e-09 63.5 44 68.2
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.9e-08 62.4 44 68.2
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 4.0e-06 54.7 44 61.4


User provided reference genes

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