Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.9e-50 202.2 101 100.0
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 9.0e-29 130.2 144 54.9
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 1.4e-13 79.7 140 40.0
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.8e-13 79.3 141 39.0
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 7.7e-12 73.9 141 36.2
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.0e-11 73.6 141 37.6
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.3e-11 73.2 141 36.9
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.2e-11 72.4 141 36.9
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 2.2e-11 72.4 141 36.9
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.2e-11 72.4 142 33.8
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 3.8e-11 71.6 141 36.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.0e-11 71.2 141 36.2
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 8.5e-11 70.5 136 35.3
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.5e-10 69.7 141 35.5
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.5e-10 69.7 141 36.2
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.5e-10 68.9 139 35.3
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 2.5e-10 68.9 141 36.2
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 2.5e-10 68.9 141 35.5
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 7.2e-10 67.4 141 34.0
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 9.4e-10 67.0 116 40.5
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.2e-09 66.6 143 37.1
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.6e-09 66.2 140 35.7
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 2.1e-09 65.9 141 34.8
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.1e-09 65.9 142 34.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.1e-09 65.9 115 40.9
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 2.7e-09 65.5 142 33.8
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.7e-09 65.5 141 35.5
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 3.6e-09 65.1 142 35.2
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 6.1e-09 64.3 142 35.2
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 8.0e-09 63.9 104 42.3
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.4e-08 63.2 141 35.5
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.4e-08 63.2 141 33.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.8e-08 62.8 141 33.3
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 1.8e-08 62.8 141 31.9
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 2.3e-08 62.4 141 31.9
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 3.0e-08 62.0 143 35.0
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 3.0e-08 62.0 143 35.0
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 3.0e-08 62.0 141 31.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 4.0e-08 61.6 141 30.5
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 5.2e-08 61.2 141 32.6
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.2e-08 61.2 144 32.6
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 5.2e-08 61.2 141 31.2
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 5.2e-08 61.2 141 34.0
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 6.7e-08 60.8 142 33.1
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.7e-08 60.8 104 41.3
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.7e-08 60.8 144 32.6
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 6.7e-08 60.8 142 31.0
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 8.8e-08 60.5 142 33.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.5e-07 59.7 141 31.2
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 2.0e-07 59.3 141 31.2
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.0e-07 59.3 144 32.6
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.6e-07 58.9 143 30.8
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 3.3e-07 58.5 142 33.8
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.4e-07 58.2 144 31.2
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 7.5e-07 57.4 135 31.9
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 9.7e-07 57.0 119 35.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 9.7e-07 57.0 142 29.6
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 9.7e-07 57.0 141 29.8
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 1.7e-06 56.2 139 32.4
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.8e-06 55.5 140 29.3
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.8e-06 55.5 143 31.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.8e-06 54.7 144 33.3
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 6.3e-06 54.3 142 31.0
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 6.3e-06 54.3 141 31.9
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 8.2e-06 53.9 135 30.4


User provided reference genes

Program Settings