Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 0.0e+00 1587.0 909 100.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.7e-294 1014.6 912 65.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 3.9e-280 968.4 921 60.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 3.3e-271 938.7 917 61.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.3e-267 926.8 939 58.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 8.4e-267 924.1 906 62.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.3e-263 911.8 926 58.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.6e-263 910.6 939 58.3
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.7e-262 908.7 922 58.0
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.5e-260 901.7 929 58.9
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.7e-259 899.8 920 57.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 4.9e-259 898.3 919 57.7
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.1e-258 897.1 924 56.8
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 5.5e-258 894.8 911 58.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.1e-258 894.4 915 58.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 9.3e-258 894.0 910 59.8
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 6.7e-256 887.9 903 58.7
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.4e-253 880.2 890 58.3
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 5.3e-253 878.2 834 62.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 7.6e-252 874.4 914 56.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.9e-250 869.8 910 56.8
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.2e-250 868.6 873 59.2
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.0e-248 864.0 918 58.0
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.8e-248 863.2 919 57.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.8e-248 863.2 873 59.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 3.3e-247 859.0 910 55.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 8.2e-246 854.4 904 57.6
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 5.3e-245 851.7 905 56.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 5.3e-245 851.7 884 59.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 5.3e-245 851.7 906 57.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.6e-244 849.4 903 55.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.0e-243 845.1 903 58.5
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 5.0e-243 845.1 902 57.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.1e-242 844.0 906 57.2
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.4e-242 843.6 912 55.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.4e-242 843.6 910 55.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.5e-242 842.8 903 58.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 7.2e-242 841.3 917 55.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 9.4e-242 840.9 931 55.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.4e-242 840.9 905 56.5
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 6.7e-240 834.7 925 56.2
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.1e-239 833.9 922 55.6
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 4.3e-239 832.0 915 57.9
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 7.4e-239 831.2 908 57.4
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.7e-238 830.1 910 54.4
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.7e-238 830.1 918 54.0
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.8e-238 829.3 913 56.5
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 2.4e-237 826.2 903 57.7
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 5.3e-237 825.1 917 55.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 7.7e-236 821.2 949 54.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.7e-235 820.1 923 57.1
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.7e-235 820.1 878 55.2
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 6.5e-235 818.1 923 53.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.4e-234 817.0 890 57.4
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.4e-234 817.0 906 55.0
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.9e-234 816.6 920 54.5
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 3.2e-234 815.8 925 56.5
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.1e-233 813.1 908 56.4
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 3.6e-233 812.4 938 57.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.5e-231 807.0 820 58.8
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 4.4e-231 805.4 844 57.3
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.1e-229 798.9 916 53.7
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.3e-229 798.5 858 55.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.4e-228 795.8 937 54.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 3.4e-228 795.8 888 55.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 4.5e-228 795.4 903 54.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-227 793.9 916 53.2
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.7e-225 786.2 905 54.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.0e-224 784.3 908 54.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.0e-224 784.3 925 53.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.4e-224 783.9 903 53.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-224 783.9 920 53.8
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.5e-223 780.4 903 54.6
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.4e-223 778.9 918 52.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 5.7e-223 778.5 922 55.1
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.2e-220 770.8 869 54.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.2e-218 762.7 890 52.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 8.0e-217 758.1 869 54.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.0e-216 757.7 881 53.6
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.3e-215 752.7 874 53.1
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 4.8e-214 748.8 884 52.4
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 4.1e-213 745.7 727 59.3
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.0e-212 743.4 882 52.4
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.5e-212 742.3 774 57.1
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.0e-211 741.1 881 51.9
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.0e-211 741.1 914 50.1
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.0e-208 731.1 881 50.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.7e-206 723.8 897 50.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 9.1e-205 718.0 872 52.2
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.9e-203 713.0 884 50.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.0e-200 704.5 877 51.1
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-200 704.1 883 50.2
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.8e-200 703.7 887 48.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 4.0e-200 702.6 866 52.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.2e-199 701.0 920 49.6
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 9.2e-197 691.4 896 48.2
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-194 684.1 876 50.8
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 4.3e-194 682.6 891 49.3
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 5.6e-194 682.2 903 48.8
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-193 680.6 882 49.4
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.6e-191 673.3 822 51.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.6e-191 673.3 849 50.6
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.4e-191 672.9 870 50.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.9e-190 669.8 876 47.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 8.3e-190 668.3 896 47.4
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 8.9e-184 648.3 766 52.2
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.6e-183 646.7 884 46.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.7e-180 636.7 910 46.9
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 6.0e-180 635.6 867 45.6
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.3e-179 633.6 848 48.8
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.4e-173 614.4 605 57.9
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.6e-164 584.3 565 60.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.3e-163 581.3 677 54.4
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.8e-161 573.5 865 44.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-159 567.8 880 43.8
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 7.6e-159 565.5 877 44.4
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 9.6e-146 521.9 642 51.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.1e-145 520.8 1055 38.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.8e-137 493.8 848 41.2
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.8e-131 474.6 401 66.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-127 461.5 446 59.0
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-122 444.9 759 42.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.4e-115 421.8 1014 35.2
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.1e-114 418.7 897 36.7
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.4e-106 390.2 450 52.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.2e-102 377.9 991 33.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 8.0e-100 369.4 341 59.8
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.7e-94 351.7 247 74.9
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.8e-94 350.5 285 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.5e-94 349.4 961 34.9
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.2e-92 345.5 350 55.7
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-89 334.7 487 45.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-85 320.5 879 32.0
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.2e-85 320.5 879 32.0
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 5.2e-83 313.5 984 30.4
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.9e-73 281.2 217 66.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 9.2e-72 276.2 205 69.3
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.2e-65 255.0 806 30.3
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-60 239.2 227 56.8
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.6e-60 238.8 398 42.5
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.1e-60 238.4 853 28.5
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 8.1e-60 236.5 406 42.9
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-59 235.3 398 42.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-56 224.6 408 41.4
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 4.3e-53 214.2 358 41.1
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-52 212.2 397 41.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 6.2e-52 210.3 447 36.2
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.2e-48 198.0 333 47.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.8e-44 184.1 360 37.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-43 181.4 143 65.7
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-42 179.5 305 41.6
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-42 179.5 209 49.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.2e-41 175.3 174 63.2
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 7.1e-40 170.2 169 58.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.0e-38 166.4 185 50.3
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.3e-38 166.0 692 29.0
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 5.6e-37 160.6 274 40.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-35 156.4 189 51.9
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.8e-35 155.6 238 42.4
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-34 151.8 164 55.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.2e-32 144.4 176 43.8
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 7.1e-32 143.7 130 54.6
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.7e-30 137.1 958 25.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-29 136.0 301 34.9
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.5e-29 135.2 300 34.3
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.5e-26 124.4 132 57.6
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-25 122.1 297 33.0
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-24 119.0 298 32.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.8e-20 105.1 121 56.2
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.0e-14 86.7 181 32.0
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-11 76.3 82 51.2
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 2.4e-11 75.5 273 31.5
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.4e-10 71.6 113 43.4
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.3e-09 69.7 73 52.1
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.1e-06 57.8 146 33.6


User provided reference genes

Program Settings