Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.7e-105 386.0 189 100.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.2e-59 232.3 178 64.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.7e-58 229.2 180 61.1
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.7e-57 226.5 178 60.7
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 5.1e-57 224.9 180 60.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.5e-56 223.4 179 58.1
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 3.3e-56 222.2 179 59.2
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.3e-56 221.9 178 59.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.5e-56 220.7 179 58.1
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.6e-55 218.8 179 58.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.2e-55 218.0 178 56.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.1e-54 217.2 179 58.1
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.1e-54 215.7 178 57.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.1e-54 215.7 180 56.7
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.2e-54 214.9 178 59.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.4e-53 212.2 179 58.7
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 7.5e-53 211.1 178 55.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.7e-52 209.9 178 56.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.9e-52 209.1 176 56.8
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.9e-52 209.1 171 57.9
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.3e-52 207.6 178 54.5
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.9e-51 206.5 182 57.1
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.2e-51 205.7 179 55.3
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.1e-51 205.3 179 57.5
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 7.1e-51 204.5 180 53.3
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.2e-50 203.8 178 57.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.1e-50 203.0 180 56.7
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 7.8e-50 201.1 178 55.1
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.0e-49 200.7 180 55.0
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.3e-49 200.3 178 53.9
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.7e-49 199.9 180 55.6
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.7e-49 199.9 179 56.4
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.3e-49 199.5 179 55.3
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 3.9e-49 198.7 184 52.7
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.9e-49 198.7 161 59.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 5.1e-49 198.4 180 54.4
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.1e-49 198.4 179 54.7
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 5.1e-49 198.4 179 54.2
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 6.6e-49 198.0 179 54.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 6.6e-49 198.0 178 52.2
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.6e-49 197.6 180 54.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.1e-48 197.2 180 54.4
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.5e-48 196.8 180 55.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.5e-48 196.1 181 53.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.3e-48 195.7 178 53.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 9.5e-48 194.1 180 52.8
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.6e-47 193.4 180 55.6
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.1e-47 193.0 186 52.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.1e-47 193.0 180 51.7
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 4.7e-47 191.8 174 54.6
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 4.7e-47 191.8 180 52.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 6.2e-47 191.4 178 53.4
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.4e-46 189.5 180 51.1
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 4.0e-46 188.7 180 51.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.2e-46 188.3 180 51.7
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.8e-46 188.0 180 50.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.8e-46 188.0 178 53.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 8.9e-46 187.6 178 53.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 8.9e-46 187.6 179 50.3
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 8.9e-46 187.6 180 51.7
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.0e-45 186.4 180 50.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.0e-45 186.4 200 49.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 4.4e-45 185.3 201 47.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.4e-45 185.3 178 52.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.8e-45 184.9 180 52.8
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.8e-45 184.9 178 51.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 7.6e-45 184.5 203 48.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.3e-44 183.7 181 51.9
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-44 183.3 179 52.0
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.7e-44 183.3 180 50.0
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.2e-44 183.0 180 52.2
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.2e-44 183.0 178 51.1
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.2e-44 183.0 182 48.9
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.9e-44 182.6 178 50.0
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.8e-44 182.2 181 51.4
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.8e-44 182.2 184 51.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.9e-44 181.8 176 51.1
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.9e-44 181.8 178 50.6
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 8.4e-44 181.0 182 52.7
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.4e-43 180.3 178 49.4
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.9e-43 179.9 180 51.1
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.4e-43 179.5 168 53.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.4e-43 179.5 184 48.4
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.4e-43 179.5 178 49.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.2e-43 179.1 183 51.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 7.1e-43 177.9 180 48.9
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.6e-42 176.8 180 50.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 7.8e-42 174.5 182 48.9
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.0e-41 172.6 178 49.4
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 5.1e-41 171.8 166 53.0
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 6.6e-41 171.4 162 51.9
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.7e-41 171.0 156 53.8
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.5e-40 169.5 165 51.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.3e-40 169.1 164 51.2
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 3.3e-40 169.1 181 47.5
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 5.6e-40 168.3 164 51.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.6e-39 165.6 161 51.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.7e-39 165.2 203 43.3
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 6.2e-39 164.9 170 47.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.1e-39 164.5 177 48.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.1e-39 164.5 177 48.6
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.4e-38 163.7 187 44.4
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.4e-38 163.7 168 51.2
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.1e-38 162.5 179 45.8
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.1e-38 162.5 179 46.4
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.0e-38 161.0 162 49.4
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.0e-37 159.8 180 41.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-37 159.8 182 45.6
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-37 159.8 184 48.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.0e-37 159.8 181 45.9
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-37 159.5 155 51.6
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.4e-37 158.7 178 41.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.4e-37 158.7 178 41.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.4e-37 158.7 178 41.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 4.4e-37 158.7 178 41.0
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 9.9e-37 157.5 180 41.1
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 9.9e-37 157.5 180 41.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.3e-36 157.1 179 41.3
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-36 157.1 176 40.9
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.7e-36 156.8 164 47.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.2e-36 156.4 185 46.5
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 3.8e-36 155.6 167 48.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.4e-36 154.8 180 40.6
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.4e-36 154.8 180 40.6
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-35 154.1 178 42.7
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.4e-35 153.7 179 39.7
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.4e-35 153.7 145 49.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.4e-35 153.7 184 46.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.2e-35 152.5 185 48.1
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.2e-35 152.1 183 40.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 5.4e-35 151.8 187 42.8
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.4e-35 151.8 182 39.0
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.1e-34 149.8 180 39.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 2.7e-34 149.4 179 39.7
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 4.6e-34 148.7 227 37.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 6.0e-34 148.3 166 41.0
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 6.0e-34 148.3 159 42.1
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.8e-34 147.9 180 39.4
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.3e-33 147.1 180 44.4
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 3.0e-33 146.0 187 44.4
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 3.9e-33 145.6 168 42.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.5e-32 143.7 169 46.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.6e-32 141.0 241 36.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.6e-31 140.2 180 38.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.8e-30 136.7 187 40.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 9.0e-30 134.4 131 50.4
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.5e-29 133.7 148 41.9
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-29 133.7 177 36.2
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 3.8e-28 129.0 170 43.5
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 5.4e-27 125.2 132 50.0
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-26 124.0 165 43.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.6e-26 123.6 101 55.4
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.0e-25 120.9 200 34.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.9e-24 116.7 79 65.8
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.3e-24 115.5 72 70.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.1e-22 110.9 176 35.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.8e-22 110.2 85 58.8
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 6.9e-22 108.2 130 45.4
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 3.8e-20 102.4 263 27.8
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.9e-19 100.1 117 44.4
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 5.1e-17 92.0 62 62.9
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 5.1e-17 92.0 153 35.3
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.9e-16 90.1 271 26.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 7.4e-16 88.2 92 41.3
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.3e-15 87.4 64 64.1
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.1e-15 86.7 131 40.5
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 3.7e-15 85.9 85 44.7
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 6.2e-15 85.1 142 38.0
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.3e-14 82.0 67 58.2
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 9.0e-14 81.3 146 33.6
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 7.6e-13 78.2 102 43.1
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-11 72.8 146 34.9
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 4.2e-11 72.4 46 69.6
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 7.1e-11 71.6 56 62.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.3e-09 67.4 101 37.6
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-08 64.3 60 50.0
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.7e-08 62.0 35 71.4
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.4e-06 57.4 48 54.2


User provided reference genes

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