Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 9.3e-170 600.1 303 100.0
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 9.6e-143 510.4 300 83.0
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 1.3e-142 510.0 303 83.2
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 6.9e-141 504.2 302 81.5
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 1.2e-140 503.4 301 81.7
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 1.5e-140 503.1 304 82.2
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 2.0e-140 502.7 301 82.1
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 3.4e-140 501.9 300 82.7
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 4.5e-140 501.5 301 82.1
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 4.5e-140 501.5 303 80.2
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 4.5e-140 501.5 303 80.2
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 7.6e-140 500.7 301 81.4
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 2.2e-139 499.2 303 79.5
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 3.8e-139 498.4 303 78.9
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 3.8e-139 498.4 302 80.5
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 5.0e-139 498.0 303 79.5
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 5.0e-139 498.0 303 79.5
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 8.5e-139 497.3 301 81.4
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 8.5e-139 497.3 303 79.5
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 3.2e-138 495.4 303 80.2
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 4.2e-138 495.0 303 79.9
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 5.5e-138 494.6 303 79.5
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 7.2e-138 494.2 301 80.1
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 7.2e-138 494.2 301 80.1
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 1.2e-137 493.4 303 78.5
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 1.2e-137 493.4 303 78.5
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 1.6e-137 493.0 303 78.2
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.1e-137 492.7 303 79.2
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.1e-137 492.7 303 79.2
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 2.7e-137 492.3 303 79.2
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 6.1e-137 491.1 303 77.6
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 7.9e-137 490.7 303 78.9
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 1.0e-136 490.3 303 78.9
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.0e-136 490.3 303 78.5
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 2.3e-136 489.2 301 79.4
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 2.3e-136 489.2 300 78.0
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 2.3e-136 489.2 303 78.2
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 3.0e-136 488.8 303 79.2
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 5.1e-136 488.0 303 78.9
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 5.1e-136 488.0 303 77.9
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 5.1e-136 488.0 303 76.9
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 6.7e-136 487.6 301 80.1
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.7e-136 487.3 303 78.2
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 1.5e-135 486.5 303 76.6
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 2.5e-135 485.7 303 79.2
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 3.3e-135 485.3 301 78.4
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 4.3e-135 485.0 303 77.9
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 4.3e-135 485.0 303 77.9
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.3e-134 483.4 303 78.5
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.3e-134 483.4 303 78.5
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 1.3e-134 483.4 299 77.3
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 1.6e-134 483.0 303 78.9
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 2.2e-134 482.6 303 75.9
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 1.4e-133 479.9 303 75.9
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.5e-132 476.5 295 76.9
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 1.5e-132 476.5 301 77.4
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 1.1e-130 470.3 303 73.6
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 1.9e-130 469.5 303 74.9
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 4.2e-130 468.4 293 77.8
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 7.9e-129 464.2 303 73.9
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 1.0e-128 463.8 303 75.6
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.0e-128 463.8 305 76.7
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 3.3e-127 458.8 303 75.6
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.7e-126 456.4 305 74.4
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 4.8e-126 454.9 303 72.9
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 6.3e-126 454.5 300 74.3
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 2.4e-125 452.6 287 78.4
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 2.4e-125 452.6 311 73.6
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 6.9e-125 451.1 302 72.5
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 9.1e-125 450.7 306 74.2
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 1.5e-124 449.9 306 74.2
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 3.4e-124 448.7 300 72.3
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 3.4e-124 448.7 306 71.9
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 7.7e-124 447.6 300 71.7
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 1.0e-123 447.2 301 71.4
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 1.3e-123 446.8 300 72.0
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 1.9e-122 443.0 300 71.7
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 7.2e-122 441.0 300 71.3
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 6.1e-121 438.0 300 70.7
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 7.9e-121 437.6 300 70.7
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 7.9e-121 437.6 300 70.3
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 7.9e-121 437.6 305 72.8
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 1.0e-120 437.2 300 70.7
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 3.0e-120 435.6 306 70.6
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 5.2e-120 434.9 300 70.0
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 6.7e-120 434.5 300 69.3
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 6.7e-120 434.5 300 70.0
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 6.7e-120 434.5 300 70.0
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 6.7e-120 434.5 300 68.7
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 1.5e-119 433.3 303 70.6
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 2.0e-119 433.0 300 70.7
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 1.6e-116 423.3 300 68.0
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 1.6e-116 423.3 300 68.0
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 1.6e-116 423.3 300 68.0
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 2.6e-116 422.5 275 76.0
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 1.2e-111 407.1 251 76.9
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 2.2e-110 402.9 249 77.5
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 1.0e-104 384.0 300 63.3
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 1.8e-101 373.2 305 62.3
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 3.1e-101 372.5 227 78.4
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 7.0e-101 371.3 232 76.7
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.2e-100 370.5 261 70.1
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 3.5e-100 369.0 299 63.2
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 5.5e-98 361.7 215 80.5
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 9.5e-98 360.9 235 74.9
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 1.8e-96 356.7 249 68.3
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.0e-96 355.5 221 76.0
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.0e-96 355.5 225 74.2
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 3.4e-95 352.4 255 67.5
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 9.8e-95 350.9 219 79.5
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 3.0e-88 329.3 277 58.1
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 5.4e-85 318.5 303 57.8
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 6.8e-80 301.6 339 49.9
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 1.6e-73 280.4 173 75.1
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 6.0e-60 235.3 316 43.7
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 8.1e-49 198.4 163 59.5
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 1.4e-48 197.6 146 67.1
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 6.0e-44 182.2 303 39.9
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 3.9e-43 179.5 343 35.6
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 8.1e-41 171.8 105 80.0
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 3.4e-39 166.4 177 49.2
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 1.6e-33 147.5 88 76.1
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 1.9e-29 134.0 91 69.2
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 5.5e-29 132.5 91 74.7
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 1.8e-27 127.5 350 31.1
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 5.7e-26 122.5 86 74.4
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 6.3e-25 119.0 72 73.6
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 3.1e-24 116.7 124 51.6
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 3.3e-18 96.7 64 75.0
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 4.8e-17 92.8 61 63.9
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 2.2e-14 84.0 46 82.6


User provided reference genes

Program Settings