Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003350 Simmondsia chinensis HOM05D000041 ORTHO05D006140 3.6e-140 501.5 243 100.0
PSO478G5294 Papaver somniferum HOM05D000041 ORTHO05D000061 6.1e-47 191.8 229 46.7
Rhsim08G0152000 Rhododendron simsii HOM05D000041 ORTHO05D006140 5.2e-46 188.7 226 46.0
vmacro17573 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 5.2e-46 188.7 226 45.6
PSO017G0721 Papaver somniferum HOM05D000041 ORTHO05D006140 6.7e-46 188.3 229 45.9
CDE02G0410 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 1.1e-45 187.6 232 46.1
Nn4g23280 Nelumbo nucifera HOM05D000041 ORTHO05D006140 2.6e-45 186.4 228 47.4
Hund11349 Selenicereus undatus HOM05D000041 ORTHO05D006140 3.3e-45 186.0 222 46.4
Actinidia19018 Actinidia chinensis HOM05D000041 ORTHO05D006140 4.4e-45 185.7 227 44.9
CSS0039287 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 9.7e-45 184.5 225 46.2
Eucgr.B00542 Eucalyptus grandis HOM05D000041 ORTHO05D006140 9.7e-45 184.5 229 45.9
CSS0043787 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 1.3e-44 184.1 226 45.1
Rhsim12G0153700 Rhododendron simsii HOM05D000041 ORTHO05D006140 2.8e-44 183.0 227 45.8
CDE04G1628 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 3.7e-44 182.6 232 45.3
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 6.3e-44 181.8 228 44.3
Hma1.2p1_0060F.1_g033480 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 1.1e-43 181.0 226 45.6
Actinidia04865 Actinidia chinensis HOM05D000041 ORTHO05D006140 1.8e-43 180.3 229 45.4
HanXRQChr04g0107201 Helianthus annuus HOM05D000041 ORTHO05D006140 1.8e-43 180.3 226 45.1
DCAR_016582 Daucus carota HOM05D000041 ORTHO05D006140 3.1e-43 179.5 221 44.3
Hma1.2p1_2933F.1_g330550 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 3.1e-43 179.5 226 45.1
Ah.02g113790 Amaranthus hybridus HOM05D000041 ORTHO05D006140 5.3e-43 178.7 228 44.3
Potri.012G068100 Populus trichocarpa HOM05D000041 ORTHO05D006140 1.2e-42 177.6 228 44.7
Lj1g0011184 Lotus japonicus HOM05D000041 ORTHO05D006140 1.6e-42 177.2 218 47.7
Lalb_Chr11g0071711 Lupinus albus HOM05D000041 ORTHO05D006140 1.6e-42 177.2 218 46.3
Atru.chr9.344 Acer truncatum HOM05D000041 ORTHO05D006140 2.0e-42 176.8 229 44.5
Lj5A107T101 Lonicera japonica HOM05D000041 ORTHO05D006140 2.0e-42 176.8 231 44.6
TAR629G1015 Trochodendron aralioides HOM05D000041 ORTHO05D006140 2.0e-42 176.8 228 46.1
Ciclev10020015m.g Citrus clementina HOM05D000041 ORTHO05D006140 2.6e-42 176.4 229 45.4
HanXRQChr08g0236771 Helianthus annuus HOM05D000041 ORTHO05D006140 2.6e-42 176.4 226 43.4
Duzib084G1175 Durio zibethinus HOM05D000041 ORTHO05D006140 3.5e-42 176.0 235 44.3
Gorai.001G079100 Gossypium raimondii HOM05D000041 ORTHO05D006140 3.5e-42 176.0 230 44.8
Aqoxy3G03493 Aquilegia oxysepala HOM05D000041 ORTHO05D006140 4.5e-42 175.6 230 43.0
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 5.9e-42 175.3 230 45.7
Glyma.06G196600 Glycine max HOM05D000041 ORTHO05D006140 5.9e-42 175.3 227 46.3
Gohir.A07G070500 Gossypium hirsutum HOM05D000041 ORTHO05D006140 7.7e-42 174.9 230 44.3
ECA246G3346 Erigeron canadensis HOM05D000041 ORTHO05D006140 1.0e-41 174.5 226 43.4
TWI60G1324 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 1.0e-41 174.5 231 44.2
DCAR_026036 Daucus carota HOM05D000041 ORTHO05D006140 1.3e-41 174.1 226 42.0
Dinv38747 Davidia involucrata HOM05D000041 ORTHO05D006140 2.2e-41 173.3 228 44.3
ECA247G0382 Erigeron canadensis HOM05D000041 ORTHO05D006140 2.2e-41 173.3 226 43.4
Lsat_1_v5_gn_1_14381 Lactuca sativa HOM05D000041 ORTHO05D006140 2.2e-41 173.3 226 44.2
Glyma.04G165900 Glycine max HOM05D000041 ORTHO05D006140 2.9e-41 172.9 223 46.2
Phvul.009G185000 Phaseolus vulgaris HOM05D000041 ORTHO05D006140 2.9e-41 172.9 218 45.9
Migut.I00214 Erythranthe guttata HOM05D000041 ORTHO05D006140 3.8e-41 172.6 227 43.2
arahy.Tifrunner.gnm1.ann1.C7Z6YQ Arachis hypogaea HOM05D000041 ORTHO05D006140 5.0e-41 172.2 218 45.9
Lj9A467T86 Lonicera japonica HOM05D000041 ORTHO05D006140 5.0e-41 172.2 226 45.1
Solyc03g115720.3 Solanum lycopersicum HOM05D000041 ORTHO05D006140 6.5e-41 171.8 227 42.7
MBI16_g06793_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D006140 8.5e-41 171.4 233 43.3
VMungo1309G2906 Vigna mungo HOM05D000041 ORTHO05D006140 8.5e-41 171.4 220 45.9
A09p59780 Brassica napus HOM05D000041 ORTHO05D006140 1.1e-40 171.0 230 43.0
Oeu052459.1 Olea europaea HOM05D000041 ORTHO05D006140 1.1e-40 171.0 227 44.1
Manes.14G081900 Manihot esculenta HOM05D000041 ORTHO05D006140 1.5e-40 170.6 228 44.7
CsaV3_1G002560 Cucumis sativus L. HOM05D000041 ORTHO05D006140 1.9e-40 170.2 232 42.2
arahy.Tifrunner.gnm1.ann1.JQ6XER Arachis hypogaea HOM05D000041 ORTHO05D006140 2.5e-40 169.9 218 45.4
MELO3C017192.2 Cucumis melo HOM05D000041 ORTHO05D006140 2.5e-40 169.9 232 42.2
Sopen03g034700 Solanum pennellii HOM05D000041 ORTHO05D006140 3.2e-40 169.5 227 42.3
AUR62021627 Chenopodium quinoa HOM05D000041 ORTHO05D006140 4.2e-40 169.1 248 41.1
MSTRG.23000 Avicennia marina HOM05D000041 ORTHO05D006140 5.5e-40 168.7 227 42.7
BcaB03g14492 Brassica carinata HOM05D000041 ORTHO05D006140 5.5e-40 168.7 229 43.7
Lalb_Chr08g0235431 Lupinus albus HOM05D000041 ORTHO05D006140 5.5e-40 168.7 218 44.5
BcaC07g41312 Brassica carinata HOM05D000041 ORTHO05D006140 7.2e-40 168.3 230 42.6
BraA09t41355Z Brassica rapa HOM05D000041 ORTHO05D006140 9.4e-40 167.9 230 42.6
unitig_0.g773 Utricularia gibba HOM05D000041 ORTHO05D006140 9.4e-40 167.9 228 43.0
Duzib205G1692 Durio zibethinus HOM05D000041 ORTHO05D006140 1.2e-39 167.5 234 42.7
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 1.6e-39 167.2 218 44.5
CARHR019290 Cardamine hirsuta HOM05D000041 ORTHO05D006140 2.1e-39 166.8 229 42.4
Psat5g199640 Pisum sativum HOM05D000041 ORTHO05D006140 2.7e-39 166.4 218 44.0
Thecc.03G094500 Theobroma cacao HOM05D000041 ORTHO05D006140 2.7e-39 166.4 229 42.8
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 2.7e-39 166.4 224 44.6
PGR083G0939 Punica granatum HOM05D000041 ORTHO05D006140 3.6e-39 166.0 259 39.0
Sed0001387 Sechium edule HOM05D000041 ORTHO05D006140 3.6e-39 166.0 230 43.9
GSVIVG01007961001 Vitis vinifera HOM05D000041 ORTHO05D006140 3.6e-39 166.0 231 42.4
BcaB07g31886 Brassica carinata HOM05D000041 ORTHO05D006140 4.7e-39 165.6 229 42.4
Peaxi162Scf00274g00349 Petunia axillaris HOM05D000041 ORTHO05D006140 4.7e-39 165.6 230 41.3
QL10p017885 Quercus lobata HOM05D000041 ORTHO05D006140 4.7e-39 165.6 248 40.7
AT1G18660 Arabidopsis thaliana HOM05D000041 ORTHO05D006140 6.1e-39 165.2 229 42.4
BcaC05g25761 Brassica carinata HOM05D000041 ORTHO05D006140 6.1e-39 165.2 229 42.4
A06p14770 Brassica napus HOM05D000041 ORTHO05D006140 6.1e-39 165.2 229 42.4
C05p16920 Brassica napus HOM05D000041 ORTHO05D006140 6.1e-39 165.2 229 42.4
BraA06t24600Z Brassica rapa HOM05D000041 ORTHO05D006140 6.1e-39 165.2 229 42.4
Ca_14694_v3 Cicer arietinum L. HOM05D000041 ORTHO05D006140 6.1e-39 165.2 220 44.5
EL10Ac5g11065 Beta vulgaris HOM05D000041 ORTHO05D006140 1.0e-38 164.5 250 42.0
CAN.G479.58 Capsicum annuum HOM05D000041 ORTHO05D006140 1.0e-38 164.5 227 41.9
COL.COLO4_36953 Corchorus olitorius HOM05D000041 ORTHO05D006140 1.0e-38 164.5 235 43.4
RcHm_v2.0_Chr7g0182141 Rosa chinensis HOM05D000041 ORTHO05D006140 1.0e-38 164.5 234 41.9
THA.LOC104813886 Tarenaya hassleriana HOM05D000041 ORTHO05D006140 1.0e-38 164.5 229 41.0
Cc04_g14400 Coffea canephora HOM05D000041 ORTHO05D006140 1.4e-38 164.1 227 42.7
TWI81G0058 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 1.4e-38 164.1 231 42.0
C08p43200 Brassica napus HOM05D000041 ORTHO05D006140 1.8e-38 163.7 230 41.7
BolC5t30395H Brassica oleracea HOM05D000041 ORTHO05D006140 1.8e-38 163.7 229 42.4
MD14G1205300 Malus domestica HOM05D000041 ORTHO05D006140 1.8e-38 163.7 231 42.0
Nitab4.5_0002756g0120 Nicotiana tabacum HOM05D000041 ORTHO05D006140 1.8e-38 163.7 227 41.9
FAN13G2854 Fragaria x ananassa HOM05D000041 ORTHO05D006140 3.0e-38 162.9 230 40.9
Hund09835 Selenicereus undatus HOM05D000041 ORTHO05D006140 3.0e-38 162.9 187 48.1
FvH4_5g14510 Fragaria vesca HOM05D000041 ORTHO05D006140 4.0e-38 162.5 234 41.9
Carub.0001s1829 Capsella rubella HOM05D000041 ORTHO05D006140 5.2e-38 162.2 229 41.9
Thhalv10007493m.g Eutrema salsugineum HOM05D000041 ORTHO05D006140 6.8e-38 161.8 222 42.3
Prupe.5G198700 Prunus persica HOM05D000041 ORTHO05D006140 6.8e-38 161.8 226 42.0
BolC8t51874H Brassica oleracea HOM05D000041 ORTHO05D006140 8.8e-38 161.4 230 40.9
FAN18G2506 Fragaria x ananassa HOM05D000041 ORTHO05D006140 1.2e-37 161.0 234 41.5
MD06G1197800 Malus domestica HOM05D000041 ORTHO05D006140 1.5e-37 160.6 231 41.6
Nitab4.5_0001211g0200 Nicotiana tabacum HOM05D000041 ORTHO05D006140 1.5e-37 160.6 227 41.4
SGA_v2.0_scaffold313G48328 Striga asiatica HOM05D000041 ORTHO05D006140 1.5e-37 160.6 220 41.8
ATR0730G006 Amborella trichopoda HOM05D000041 ORTHO05D006140 3.4e-37 159.5 228 43.0
CANSAT80G0179 Cannabis sativa HOM05D000041 ORTHO05D006140 3.4e-37 159.5 231 41.1
FAN08G1333 Fragaria x ananassa HOM05D000041 ORTHO05D006140 4.4e-37 159.1 230 40.4
TAR371G0053 Trochodendron aralioides HOM05D000041 ORTHO05D006140 7.5e-37 158.3 198 44.9
ClCG06G016000 Citrullus lanatus HOM05D000041 ORTHO05D006140 9.7e-37 157.9 247 39.7
Sp1g16630 Schrenkiella parvula HOM05D000041 ORTHO05D006140 9.7e-37 157.9 229 41.5
AUR62008466 Chenopodium quinoa HOM05D000041 ORTHO05D006140 1.7e-36 157.1 185 45.9
Mapoly0007s0251 Marchantia polymorpha HOM05D000041 ORTHO05D006140 2.8e-36 156.4 228 40.4
Dinv10659 Davidia involucrata HOM05D000041 ORTHO05D006140 3.7e-36 156.0 187 45.5
SEGI_30138 Sequoiadendron giganteum HOM05D000041 ORTHO05D006140 3.7e-36 156.0 232 40.1
Zm00001eb020460 Zea mays HOM05D000041 ORTHO05D006140 3.7e-36 156.0 222 40.1
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 7.0e-35 151.8 222 38.7
Sc04g0002810 Simmondsia chinensis HOM05D000041 ORTHO05D006140 7.0e-35 151.8 155 49.0
AL1G31110 Arabidopsis lyrata HOM05D000041 ORTHO05D006140 1.2e-34 151.0 185 44.3
Aa31LG7G3420 Aethionema arabicum HOM05D000041 ORTHO05D006140 5.9e-34 148.7 191 44.0
Lsat_1_v5_gn_5_21580 Lactuca sativa HOM05D000041 ORTHO05D006140 1.7e-33 147.1 243 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2038 Anthoceros agrestis HOM05D000041 ORTHO05D006140 5.0e-33 145.6 227 36.6
vmacro16523 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 3.2e-32 142.9 226 40.3
Sc04g0003370 Simmondsia chinensis HOM05D000041 ORTHO05D006140 7.2e-24 115.2 121 47.9
C08p32020 Brassica napus HOM05D000041 ORTHO05D006140 8.0e-23 111.7 230 37.0
BcaC07g39990 Brassica carinata HOM05D000041 ORTHO05D006140 7.0e-19 98.6 234 32.9
Cre17.g716850 Chlamydomonas reinhardtii HOM05D000041 ORTHO05D006140 6.1e-15 85.5 246 26.8
Haze_07657 Corylus avellana HOM05D000041 ORTHO05D006140 1.5e-13 80.9 106 45.3
Gohir.D07G075000 Gossypium hirsutum HOM05D000041 ORTHO05D006140 1.1e-11 74.7 144 37.5
Cpa.g.sc13.299 Carica papaya HOM05D000041 ORTHO05D006140 1.6e-07 60.8 104 35.6
Sc04g0002820 Simmondsia chinensis HOM05D000041 ORTHO05D006140 2.1e-07 60.5 73 53.4
HanXRQChr09g0255621 Helianthus annuus HOM05D001177 ORTHO05D007091 3.6e-07 59.7 136 30.1
Lsat_1_v5_gn_4_183800 Lactuca sativa HOM05D001177 ORTHO05D007091 4.7e-07 59.3 106 32.1
Cfa026163 Carpinus fangiana HOM05D000041 ORTHO05D006140 6.2e-07 58.9 50 40.0
Nn4g22453 Nelumbo nucifera HOM05D001177 ORTHO05D007091 8.0e-07 58.5 95 34.7
MELO3C014848.2 Cucumis melo HOM05D001177 ORTHO05D007091 1.8e-06 57.4 96 34.4
DCAR_018511 Daucus carota HOM05D000001 ORTHO05D002182 1.8e-06 57.4 40 52.5
SGA_v2.0_scaffold135G34937 Striga asiatica HOM05D001177 ORTHO05D007091 1.8e-06 57.4 71 39.4
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 2.3e-06 57.0 96 34.4
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 2.3e-06 57.0 96 34.4
CDE04G2105 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 3.1e-06 56.6 63 39.7
MCO11G242 Micromonas commoda HOM05D000041 ORTHO05D006140 3.1e-06 56.6 46 41.3
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 3.1e-06 56.6 81 38.3
arahy.Tifrunner.gnm1.ann1.PL2FJ9 Arachis hypogaea HOM05D000001 ORTHO05D002182 4.0e-06 56.2 45 44.4
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 4.0e-06 56.2 94 36.2
arahy.Tifrunner.gnm1.ann1.CR4GUX Arachis hypogaea HOM05D000001 ORTHO05D002182 5.2e-06 55.8 45 44.4
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 5.2e-06 55.8 81 38.3
CDE07G0753 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 6.8e-06 55.5 94 36.2
Duzib138G0763 Durio zibethinus HOM05D000001 ORTHO05D002182 6.8e-06 55.5 65 32.3
Duzib187G1086 Durio zibethinus HOM05D001177 ORTHO05D007091 6.8e-06 55.5 71 39.4
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 6.8e-06 55.5 71 40.8
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 6.8e-06 55.5 71 40.8
Solyc02g067970.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 6.8e-06 55.5 71 40.8
Sopen02g017100 Solanum pennellii HOM05D001177 ORTHO05D007091 6.8e-06 55.5 71 40.8
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 8.9e-06 55.1 71 39.4
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 8.9e-06 55.1 71 40.8
Manes.17G074900 Manihot esculenta HOM05D000001 ORTHO05D002182 8.9e-06 55.1 38 52.6
Mapoly0044s0127 Marchantia polymorpha HOM05D002098 ORTHO05D001998 8.9e-06 55.1 65 38.5
Medtr7g035445 Medicago truncatula HOM05D001177 ORTHO05D007091 8.9e-06 55.1 71 39.4
Nn1g02904 Nelumbo nucifera HOM05D000001 ORTHO05D002182 8.9e-06 55.1 38 52.6
Potri.002G259000 Populus trichocarpa HOM05D000001 ORTHO05D002182 8.9e-06 55.1 38 50.0
Sc03g0007010 Simmondsia chinensis HOM05D001177 ORTHO05D007091 8.9e-06 55.1 71 39.4
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 8.9e-06 55.1 71 39.4


User provided reference genes

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