Gene: AT1G18660
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G18660
- Transcript Identifier AT1G18660.4
- Gene Type Coding gene
- Location Chr1 : 6421433-6425489 : positive
Gene Family Information
- ID HOM05D000041
- #Genes/#Species 4923/100
- Phylogenetic origin
- ID ORTHO05D006140
- #Genes/#Species 147/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G18660.4
- uniprot Q8H0X2
Descriptions
- Description zinc finger (C3HC4-type RING finger) family protein
- Computational description zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink).
- Computational description zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006468 | ISO | PLAZA Homology (enrichment) | protein phosphorylation | HOM05D000041 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D000041 |
| GO:0004672 | ISO | PLAZA Homology (enrichment) | protein kinase activity | HOM05D000041 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005886 | IDA | Gene Ontology | plasma membrane | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.4.2.4 | Protein homeostasis.proteolysis.serine-type peptidase activities.S16-class protease (LON) |