Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 0.0e+00 1332.0 757 100.0
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.8e-270 936.0 762 74.1
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.5e-264 915.6 757 74.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.1e-263 911.0 799 61.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.0e-262 908.7 757 73.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-261 906.0 645 71.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.7e-260 902.9 761 74.1
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.6e-258 896.3 759 72.6
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.8e-257 891.7 760 73.2
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.8e-257 891.7 757 73.3
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 5.6e-256 887.9 759 73.4
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.8e-254 882.9 761 71.6
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 3.0e-254 882.1 757 71.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 6.8e-254 880.9 759 72.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.6e-253 879.0 781 70.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.4e-253 878.6 766 71.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.4e-253 878.2 758 72.4
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.4e-253 878.2 758 72.4
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 4.6e-250 868.2 765 70.2
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 6.6e-249 864.4 752 71.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 6.6e-249 864.4 794 67.3
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 4.3e-248 861.7 761 71.9
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.6e-245 852.4 645 68.1
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 5.8e-245 851.3 759 70.8
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 7.5e-245 850.9 765 69.8
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 2.9e-244 849.0 760 71.3
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.9e-244 849.0 765 69.8
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.2e-242 843.6 757 70.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.8e-242 840.9 761 70.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.3e-241 839.3 759 70.5
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.2e-239 833.6 774 67.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 3.1e-238 828.9 764 69.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.8e-238 827.8 761 69.9
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 8.9e-238 827.4 761 70.0
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.5e-237 826.6 767 69.4
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.6e-237 825.9 762 69.2
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.4e-237 825.5 762 70.2
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 7.5e-237 824.3 783 66.7
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.5e-237 824.3 762 70.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 9.9e-237 823.9 759 68.6
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.2e-236 822.8 760 68.8
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.2e-236 822.8 794 56.5
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.2e-236 822.8 757 69.5
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.4e-235 820.1 758 67.9
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.9e-235 819.7 764 69.6
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.2e-235 818.9 757 69.2
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.6e-234 816.6 759 68.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.1e-234 816.2 854 62.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.5e-234 815.5 760 67.9
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 4.6e-234 815.1 759 68.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 4.6e-234 815.1 759 68.5
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 2.3e-233 812.8 801 57.7
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.3e-233 812.8 758 69.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.5e-232 810.1 781 68.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.5e-232 809.3 759 66.8
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 7.3e-232 807.7 760 68.8
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 9.5e-232 807.4 829 64.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 3.1e-230 802.4 790 67.8
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 3.1e-230 802.4 768 68.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 8.9e-230 800.8 758 67.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-229 799.3 761 68.2
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 5.8e-229 798.1 761 67.9
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-228 797.0 761 67.9
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 4.9e-228 795.0 762 68.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-227 793.9 762 67.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.6e-226 790.0 757 68.6
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.0e-225 787.3 759 67.6
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-225 786.9 766 68.1
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.5e-224 783.5 806 63.0
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.9e-224 783.1 773 67.9
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 4.3e-224 781.9 761 66.8
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.2e-223 780.4 757 65.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.6e-223 780.0 758 66.1
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.4e-222 776.9 757 64.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.4e-221 772.3 690 69.9
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.7e-220 770.0 757 67.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.4e-219 766.9 760 66.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 5.4e-219 765.0 757 66.7
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 5.4e-219 765.0 768 64.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-218 763.8 785 63.2
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 6.0e-218 761.5 760 65.5
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.3e-216 755.7 760 64.7
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 3.3e-216 755.7 759 64.2
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 4.3e-216 755.4 758 64.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.3e-215 753.8 786 56.5
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.6e-215 753.4 760 66.2
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.8e-215 751.9 759 64.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.1e-214 750.7 757 64.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 5.8e-213 745.0 795 62.1
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.2e-212 743.0 842 61.2
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 9.3e-211 737.6 759 63.5
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.6e-210 736.9 647 61.2
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 6.0e-210 734.9 757 63.7
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.8e-209 733.4 760 63.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.9e-209 732.3 758 63.3
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 8.7e-209 731.1 764 63.6
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.3e-207 727.2 760 63.2
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-207 726.9 757 63.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 8.4e-204 714.5 775 52.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 7.9e-202 708.0 817 60.8
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 6.2e-199 698.4 799 61.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-198 697.2 760 62.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 8.4e-196 688.0 759 60.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-192 676.8 791 58.7
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.5e-179 633.3 724 60.2
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.7e-178 629.8 764 55.4
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.0e-177 627.9 550 75.3
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.3e-175 620.9 566 59.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.4e-174 616.7 1245 42.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.7e-157 560.1 452 63.5
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 5.0e-156 555.8 764 52.9
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.5e-155 554.3 760 55.7
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 7.2e-155 552.0 763 54.9
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.2e-154 551.2 775 53.8
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.0e-153 546.6 761 55.1
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.0e-145 519.6 537 53.4
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.0e-144 517.3 657 47.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.0e-136 490.7 390 64.1
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.0e-132 478.4 441 57.6
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 3.7e-119 433.3 366 85.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.6e-112 410.6 390 56.9
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.9e-111 406.4 387 79.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.1e-110 405.2 654 39.8
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.6e-107 392.9 365 79.7
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 9.0e-97 359.0 304 90.1
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.2e-86 323.9 336 53.9
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 7.2e-70 269.6 207 60.4
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 3.6e-69 267.3 742 32.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 8.8e-68 262.7 491 37.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-65 253.8 299 49.5
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 3.2e-62 244.2 861 38.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-57 228.8 165 67.9
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.8e-52 211.8 485 33.4
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 5.7e-51 206.8 705 29.2
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 3.5e-48 197.6 148 66.2
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-41 174.9 233 44.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-38 164.1 98 81.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.5e-38 163.7 233 43.3
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-37 161.0 92 83.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.5e-32 144.1 233 39.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 8.6e-31 139.8 151 50.3
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-30 137.9 82 80.5
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-29 135.2 146 54.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-29 134.4 84 78.6
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.0e-29 133.3 82 76.8
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 8.9e-28 129.8 160 51.9
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-27 129.0 214 41.1
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 3.7e-26 124.4 124 58.9
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-25 122.1 102 64.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-25 121.3 67 82.1
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 4.5e-24 117.5 93 66.7
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 6.6e-23 113.6 109 51.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.6e-22 110.5 59 88.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.5e-22 109.8 61 85.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.2e-21 109.4 155 94.8
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-21 108.6 61 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-21 107.8 60 85.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 8.9e-20 103.2 107 56.1
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.6e-19 101.7 111 55.9
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.9e-18 97.4 154 90.3
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-14 86.3 184 33.7
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-11 75.5 77 50.6
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.4e-09 68.6 218 27.5
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-09 67.8 60 61.7
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 5.4e-09 67.4 43 76.7
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-08 65.1 50 60.0
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.0e-08 63.9 31 96.8
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.3e-07 62.0 30 96.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.3e-07 62.0 31 93.5
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 8.6e-07 60.1 31 87.1
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.9e-06 58.9 31 90.3
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 5.6e-06 57.4 30 86.7


User provided reference genes

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