Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 0.0e+00 1136.7 639 100.0
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 6.4e-237 824.3 461 96.3
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 5.8e-222 774.6 669 68.2
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.1e-212 743.8 671 65.4
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.6e-211 738.4 669 65.5
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 3.1e-207 725.7 682 66.4
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 5.3e-207 724.9 669 65.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 7.6e-206 721.1 699 61.4
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.5e-198 696.8 677 61.9
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.5e-198 695.3 695 60.0
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.2e-197 693.0 683 62.4
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.1e-196 690.6 689 63.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.3e-194 682.9 690 59.4
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.3e-194 682.9 706 61.9
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.9e-193 679.9 671 59.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.3e-193 679.1 692 59.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.7e-192 675.6 691 57.3
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.1e-191 672.5 683 62.2
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 5.3e-191 671.8 684 62.0
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 5.3e-191 671.8 677 58.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.3e-191 671.8 681 62.6
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 3.4e-190 669.1 703 57.5
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 5.8e-190 668.3 688 60.6
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.5e-188 662.9 682 62.0
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.2e-188 662.5 680 61.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.2e-188 662.1 681 62.3
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 7.1e-188 661.4 680 61.9
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 1.6e-187 660.2 681 61.4
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.7e-187 659.4 684 57.9
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 3.5e-187 659.1 691 58.3
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 4.6e-187 658.7 718 58.9
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.0e-186 657.5 707 56.9
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 2.3e-186 656.4 691 59.6
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 6.7e-186 654.8 685 61.6
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.1e-185 654.1 659 62.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.5e-185 653.7 694 57.2
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 2.5e-185 652.9 679 58.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.5e-185 652.9 684 57.2
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 5.7e-185 651.7 685 60.0
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.7e-185 651.7 679 60.5
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.6e-184 650.2 713 56.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.1e-184 649.8 718 55.3
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.7e-184 649.0 697 60.1
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 6.3e-184 648.3 701 56.3
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 1.4e-183 647.1 708 55.2
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 6.9e-183 644.8 703 55.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.5e-182 643.7 701 56.1
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.0e-182 643.3 676 57.1
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.3e-181 640.6 692 56.4
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.7e-181 640.2 705 55.2
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 8.5e-181 637.9 680 61.6
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 1.9e-180 636.7 707 55.3
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 3.2e-180 636.0 679 60.8
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.6e-179 633.6 686 59.9
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 1.6e-179 633.6 688 58.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.9e-177 626.7 719 52.9
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.3e-176 624.0 556 63.3
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.4e-175 620.5 680 59.9
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.4e-175 619.8 679 57.9
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 2.6e-174 616.3 708 54.2
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 7.7e-174 614.8 675 57.8
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 5.0e-173 612.1 705 55.2
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.0e-173 612.1 684 56.6
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 1.9e-172 610.1 682 54.7
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 1.6e-171 607.1 691 58.9
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 7.9e-171 604.7 663 57.9
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 4.4e-169 599.0 712 54.6
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 9.7e-169 597.8 679 55.1
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.1e-167 594.3 677 53.6
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 2.4e-167 593.2 670 55.5
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.6e-166 589.7 665 53.7
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.5e-166 589.0 674 53.7
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 4.5e-166 589.0 731 52.7
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 7.7e-166 588.2 599 56.9
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.0e-165 587.8 717 54.4
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.1e-164 584.3 719 52.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 4.2e-164 582.4 686 53.9
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 7.2e-164 581.6 663 58.7
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 7.2e-164 581.6 691 53.7
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 3.6e-163 579.3 706 56.7
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 3.0e-162 576.2 603 61.7
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.3e-161 572.8 680 51.9
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 7.4e-161 571.6 665 56.5
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 9.7e-161 571.2 691 51.7
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.3e-160 568.5 669 53.1
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 3.1e-159 566.2 646 56.5
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 5.3e-159 565.5 650 56.0
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 7.0e-159 565.1 650 56.0
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.5e-158 562.8 611 58.9
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.0e-157 561.2 659 57.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.7e-157 560.5 663 52.8
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.9e-156 557.0 542 59.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.6e-155 552.7 505 61.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 4.7e-155 552.4 687 52.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 8.8e-154 548.1 694 53.6
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.5e-153 547.4 666 51.4
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.2e-152 543.5 731 53.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.1e-148 531.2 719 50.1
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.2e-148 529.6 723 50.9
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.7e-147 526.6 543 56.0
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.5e-145 520.8 555 55.0
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 3.7e-144 516.2 553 54.8
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.4e-143 514.2 528 57.4
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.1e-135 486.1 492 56.5
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 5.0e-133 479.2 494 55.9
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.8e-130 470.7 436 65.6
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.0e-129 467.2 545 53.4
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.9e-119 434.1 583 48.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.7e-117 427.6 685 42.0
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.1e-116 424.9 583 47.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 7.1e-95 352.4 349 59.6
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 9.3e-95 352.1 378 53.4
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 4.0e-90 336.7 348 62.1
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.5e-89 334.7 347 56.5
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 1.0e-85 322.0 320 60.6
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 4.3e-84 316.6 324 56.5
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.1e-83 314.3 550 38.9
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.6e-76 289.7 317 54.9
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 8.4e-72 275.8 793 30.6
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.6e-70 270.0 892 29.7
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 6.3e-67 259.6 362 47.5
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 3.9e-61 240.4 366 44.8
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 5.7e-60 236.5 325 53.5
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.8e-58 231.5 288 50.7
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-57 227.3 317 52.1
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.0e-48 199.1 274 48.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.5e-47 194.5 184 59.2
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 3.0e-45 187.6 408 34.6
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.1e-42 177.6 181 49.2
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.3e-42 176.8 138 86.2
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 7.5e-36 156.4 246 44.3
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.6e-33 148.7 142 59.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 3.2e-31 141.0 121 64.5
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.0e-29 134.4 190 49.5
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.2e-25 122.5 150 47.3
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.5e-23 113.6 125 53.6
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 9.5e-23 112.8 375 28.8
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.2e-14 85.9 77 57.1
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 8.0e-14 83.2 72 68.1
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 8.6e-08 63.2 50 56.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 9.5e-07 59.7 44 59.1


User provided reference genes

Program Settings