Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007940 Simmondsia chinensis HOM05D006918 ORTHO05D008525 4.4e-80 303.1 568 100.0
Dinv19625 Davidia involucrata HOM05D006918 ORTHO05D008525 7.3e-43 179.5 119 70.6
Thecc.07G154400 Theobroma cacao HOM05D006918 ORTHO05D008525 1.2e-42 178.7 120 69.2
Haze_08532 Corylus avellana HOM05D006918 ORTHO05D008525 1.6e-42 178.3 120 72.5
Cfa019430 Carpinus fangiana HOM05D006918 ORTHO05D008525 2.1e-42 177.9 120 72.5
CSS0032788 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 2.8e-42 177.6 119 68.9
EL10Ac4g08564 Beta vulgaris HOM05D006918 ORTHO05D008525 3.6e-42 177.2 113 76.1
CSS0007445 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 4.7e-42 176.8 120 68.3
CSS0011318 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 8.1e-42 176.0 120 68.3
Ah.04g163440 Amaranthus hybridus HOM05D006918 ORTHO05D008525 2.4e-41 174.5 113 74.3
ClCG11G016340 Citrullus lanatus HOM05D006918 ORTHO05D008525 5.2e-41 173.3 120 68.3
AUR62043059 Chenopodium quinoa HOM05D006918 ORTHO05D008525 6.8e-41 172.9 113 72.6
Sed0019951 Sechium edule HOM05D006918 ORTHO05D008525 1.2e-40 172.2 120 67.5
CiPaw.12G045100 Carya illinoinensis HOM05D006918 ORTHO05D008525 4.4e-40 170.2 121 66.9
AUR62044624 Chenopodium quinoa HOM05D006918 ORTHO05D008525 5.8e-40 169.9 113 70.8
MD10G1198700 Malus domestica HOM05D006918 ORTHO05D008525 9.9e-40 169.1 120 68.3
Gohir.D05G330400 Gossypium hirsutum HOM05D006918 ORTHO05D008525 1.4e-38 165.2 120 64.2
Gorai.009G354800 Gossypium raimondii HOM05D006918 ORTHO05D008525 1.4e-38 165.2 120 64.2
Manes.14G015600 Manihot esculenta HOM05D006918 ORTHO05D008525 1.4e-38 165.2 120 65.0
QL04p074473 Quercus lobata HOM05D006918 ORTHO05D008525 5.4e-38 163.3 121 66.9
Nn7g37872 Nelumbo nucifera HOM05D006918 ORTHO05D008525 7.1e-38 162.9 120 61.7
Prupe.4G143000 Prunus persica HOM05D006918 ORTHO05D008525 2.1e-37 161.4 120 65.0
TAR627G0890 Trochodendron aralioides HOM05D006918 ORTHO05D008525 2.1e-37 161.4 112 65.2
MD05G1216400 Malus domestica HOM05D006918 ORTHO05D008525 2.7e-37 161.0 120 64.2
CsaV3_4G031810 Cucumis sativus L. HOM05D006918 ORTHO05D008525 4.6e-37 160.2 119 63.9
Potri.011G144300 Populus trichocarpa HOM05D006918 ORTHO05D008525 2.3e-36 157.9 120 59.2
CANSAT56G0998 Cannabis sativa HOM05D006918 ORTHO05D008525 3.0e-36 157.5 119 61.3
Sabra11G0128500 Salix brachista HOM05D006918 ORTHO05D008525 3.0e-36 157.5 120 60.0
Duzib187G0932 Durio zibethinus HOM05D006918 ORTHO05D008525 6.6e-36 156.4 119 61.3
Duzib187G1351 Durio zibethinus HOM05D006918 ORTHO05D008525 6.6e-36 156.4 119 61.3
RcHm_v2.0_Chr5g0026921 Rosa chinensis HOM05D006918 ORTHO05D008525 8.7e-36 156.0 120 63.3
MELO3C010560.2 Cucumis melo HOM05D006918 ORTHO05D008525 1.1e-35 155.6 119 62.2
Sabra16G0310000 Salix brachista HOM05D006918 ORTHO05D008525 1.5e-35 155.2 120 58.3
Atru.chr12.2189 Acer truncatum HOM05D006918 ORTHO05D008525 1.9e-35 154.8 119 61.3
PSO541G4556 Papaver somniferum HOM05D006918 ORTHO05D008525 2.5e-35 154.5 117 60.7
PSO675G9078 Papaver somniferum HOM05D006918 ORTHO05D008525 2.5e-35 154.5 117 60.7
DCAR_013746 Daucus carota HOM05D006918 ORTHO05D008525 7.3e-35 152.9 113 62.8
Lj3g0009186 Lotus japonicus HOM05D006918 ORTHO05D008525 7.3e-35 152.9 122 62.3
Cpa.g.sc10.35 Carica papaya HOM05D006918 ORTHO05D008525 2.1e-34 151.4 121 62.0
Glyma.15G254900 Glycine max HOM05D006918 ORTHO05D008525 3.6e-34 150.6 122 59.0
DCAR_016820 Daucus carota HOM05D006918 ORTHO05D008525 4.8e-34 150.2 119 59.7
Eucgr.F03183 Eucalyptus grandis HOM05D006918 ORTHO05D008525 4.8e-34 150.2 119 57.1
Potri.001G457300 Populus trichocarpa HOM05D006918 ORTHO05D008525 6.2e-34 149.8 120 57.5
Rhsim04G0005900 Rhododendron simsii HOM05D006918 ORTHO05D008525 8.1e-34 149.4 122 58.2
FAN21G2086 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.1e-33 149.1 119 62.2
FAN21G2559 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.1e-33 149.1 119 62.2
VMungo1080G0996 Vigna mungo HOM05D006918 ORTHO05D008525 1.4e-33 148.7 122 58.2
FvH4_3g15990 Fragaria vesca HOM05D006918 ORTHO05D008525 2.4e-33 147.9 119 62.2
FAN11G3197 Fragaria x ananassa HOM05D006918 ORTHO05D008525 2.4e-33 147.9 119 62.2
Cc05_g15990 Coffea canephora HOM05D006918 ORTHO05D008525 3.1e-33 147.5 120 57.5
Glyma.08G172400 Glycine max HOM05D006918 ORTHO05D008525 3.1e-33 147.5 122 59.0
FAN25G3485 Fragaria x ananassa HOM05D006918 ORTHO05D008525 4.0e-33 147.1 120 60.8
Phvul.005G056300 Phaseolus vulgaris HOM05D006918 ORTHO05D008525 6.9e-33 146.4 122 58.2
TWI39G1081 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 1.2e-32 145.6 113 61.1
Lalb_Chr25g0285091 Lupinus albus HOM05D006918 ORTHO05D008525 2.6e-32 144.4 119 58.8
Aqoxy6G01201 Aquilegia oxysepala HOM05D006918 ORTHO05D008525 5.8e-32 143.3 118 58.5
Oeu056983.1 Olea europaea HOM05D006918 ORTHO05D008525 5.8e-32 143.3 116 56.0
Ciclev10019503m.g Citrus clementina HOM05D006918 ORTHO05D008525 1.3e-31 142.1 116 61.2
Migut.M01563 Erythranthe guttata HOM05D006918 ORTHO05D008525 1.7e-31 141.7 121 55.4
Ca_03688_v3 Cicer arietinum L. HOM05D006918 ORTHO05D008525 2.2e-31 141.4 125 57.6
Peaxi162Scf00452g00086 Petunia axillaris HOM05D006918 ORTHO05D008525 4.2e-30 137.1 128 53.9
Lalb_Chr01g0007081 Lupinus albus HOM05D006918 ORTHO05D008525 5.4e-30 136.7 122 55.7
TWI38G1170 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 7.1e-30 136.3 115 56.5
Lalb_Chr19g0133401 Lupinus albus HOM05D006918 ORTHO05D008525 4.6e-29 133.7 121 54.5
Lsat_1_v5_gn_7_72161 Lactuca sativa HOM05D006918 ORTHO05D008525 1.3e-28 132.1 119 54.6
Medtr2g069680 Medicago truncatula HOM05D006918 ORTHO05D008525 1.3e-28 132.1 128 53.9
Nitab4.5_0008437g0030 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.3e-28 132.1 121 55.4
Lj5C202T5 Lonicera japonica HOM05D006918 ORTHO05D008525 5.1e-28 130.2 126 53.2
PGSC0003DMG400022129 Solanum tuberosum HOM05D006918 ORTHO05D008525 5.1e-28 130.2 128 51.6
TPR.G9758 Trifolium pratense HOM05D006918 ORTHO05D008525 1.9e-27 128.3 123 53.7
Solyc07g066390.1 Solanum lycopersicum HOM05D006918 ORTHO05D008525 3.3e-27 127.5 128 50.8
Sopen07g034560 Solanum pennellii HOM05D006918 ORTHO05D008525 3.3e-27 127.5 128 50.8
Nitab4.5_0001749g0050 Nicotiana tabacum HOM05D006918 ORTHO05D008525 7.3e-27 126.3 127 50.4
TPR.G9735 Trifolium pratense HOM05D006918 ORTHO05D008525 2.8e-26 124.4 123 52.8
MSTRG.7057 Avicennia marina HOM05D006918 ORTHO05D008525 3.6e-26 124.0 115 50.4
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 3.6e-26 124.0 85 65.9
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 1.8e-25 121.7 124 51.6
TPR.G9740 Trifolium pratense HOM05D006918 ORTHO05D008525 5.3e-25 120.2 117 52.1
PGR031G3805 Punica granatum HOM05D006918 ORTHO05D008525 2.6e-24 117.9 132 50.0
HanXRQChr05g0161001 Helianthus annuus HOM05D006918 ORTHO05D008525 3.4e-24 117.5 125 51.2
Dinv42519 Davidia involucrata HOM05D006918 ORTHO05D008525 5.8e-24 116.7 70 72.9
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 1.7e-23 115.2 118 53.4
CDE04G0465 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 3.2e-22 110.9 71 64.8
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 9.3e-22 109.4 135 46.7
CAN.G943.32 Capsicum annuum HOM05D006918 ORTHO05D008525 1.6e-21 108.6 131 45.0
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 1.6e-21 108.6 133 48.1
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 3.5e-21 107.5 132 47.7
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 4.6e-21 107.1 130 45.4
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 7.9e-21 106.3 133 47.4
Psat1g002800 Pisum sativum HOM05D006918 ORTHO05D008525 1.0e-20 105.9 124 48.4
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 1.5e-19 102.1 128 46.9
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 7.4e-19 99.8 130 47.7
BcaC08g47472 Brassica carinata HOM05D006918 ORTHO05D008525 1.1e-17 95.9 123 45.5
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 1.1e-17 95.9 123 45.5
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 1.4e-17 95.5 99 49.5
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 1.4e-17 95.5 103 48.5
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 1.8e-17 95.1 99 49.5
SGA_v2.0_scaffold7G03576 Striga asiatica HOM05D006918 ORTHO05D008525 9.0e-17 92.8 74 55.4
CDE12G0330 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 2.6e-16 91.3 67 59.7
HPP92_013913 Vanilla planifolia HOM05D006918 ORTHO05D008525 2.9e-15 87.8 120 38.3
BcaB02g08665 Brassica carinata HOM05D006918 ORTHO05D008525 3.8e-15 87.4 121 44.6
HPP92_013983 Vanilla planifolia HOM05D006918 ORTHO05D008525 4.9e-15 87.0 120 38.3
BcaNung04908 Brassica carinata HOM05D006918 ORTHO05D008525 1.1e-14 85.9 97 47.4
Cfa019933 Carpinus fangiana HOM05D006918 ORTHO05D008525 4.6e-13 80.5 52 69.2
ATR1098G023 Amborella trichopoda HOM05D006918 ORTHO05D008525 1.8e-12 78.6 43 76.7
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 3.3e-11 74.3 70 51.4


User provided reference genes

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