Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.1e-216 755.4 364 100.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.7e-168 595.5 345 81.2
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.3e-167 592.4 345 80.9
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 3.0e-167 592.0 343 79.9
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 8.8e-167 590.5 343 79.9
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.2e-166 590.1 345 80.3
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.5e-166 587.4 349 80.2
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 7.5e-166 587.4 345 79.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.3e-165 586.6 345 79.4
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.1e-164 583.6 345 79.4
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 2.4e-164 582.4 343 79.0
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.1e-164 581.6 343 79.9
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 5.3e-164 581.3 343 78.7
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 9.1e-164 580.5 343 79.3
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.2e-163 580.1 342 78.7
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 1.2e-163 580.1 352 77.6
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 2.0e-163 579.3 343 79.6
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 7.7e-163 577.4 343 79.9
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.0e-162 577.0 338 79.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.0e-162 577.0 343 78.7
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.7e-162 576.2 345 79.4
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.7e-162 576.2 338 79.3
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.1e-161 573.5 345 78.0
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.2e-161 572.0 344 79.4
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 4.2e-161 571.6 343 77.8
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 9.4e-161 570.5 343 77.3
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.1e-160 569.3 342 77.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.1e-160 569.3 364 74.2
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.0e-159 565.1 342 76.0
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 4.0e-159 565.1 343 76.7
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.0e-159 565.1 342 77.8
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.2e-158 563.5 344 77.3
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.2e-158 563.5 343 77.3
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 4.4e-158 561.6 344 77.0
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 7.5e-158 560.8 346 76.3
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.8e-157 558.9 330 78.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 7.0e-156 554.3 343 75.5
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.6e-155 553.1 345 74.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 4.5e-155 551.6 345 74.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 3.3e-153 545.4 344 72.7
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 4.7e-152 541.6 338 74.3
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 6.1e-152 541.2 366 71.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.4e-151 540.0 358 71.5
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.8e-151 539.7 395 66.6
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.8e-151 539.7 338 75.1
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.5e-150 536.6 341 73.9
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 4.4e-150 535.0 341 72.4
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 7.5e-150 534.3 343 72.9
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.3e-149 533.5 359 71.6
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.7e-149 533.1 359 71.6
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.7e-149 533.1 359 72.1
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.7e-149 533.1 346 72.5
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 3.7e-149 531.9 337 73.9
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.9e-149 531.6 346 73.7
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.4e-148 530.0 344 72.7
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 5.4e-148 528.1 347 73.2
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 2.0e-147 526.2 345 72.5
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 2.0e-147 526.2 345 72.5
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.7e-147 525.8 345 72.2
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 4.5e-147 525.0 336 73.8
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 7.8e-147 524.2 338 74.6
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.7e-146 523.1 314 77.7
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.3e-146 522.7 340 70.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.3e-146 522.7 345 73.0
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 2.3e-146 522.7 331 73.1
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.0e-146 521.5 341 70.4
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.6e-146 521.2 335 71.9
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.9e-145 519.6 364 69.5
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 2.1e-144 516.2 336 72.3
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 2.8e-144 515.8 340 71.5
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 6.1e-144 514.6 314 75.2
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.5e-142 510.0 341 71.8
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 5.8e-142 508.1 343 73.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 7.5e-142 507.7 339 69.6
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.6e-139 500.0 314 73.6
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.0e-139 499.6 338 69.8
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.0e-139 499.6 315 73.3
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 4.6e-139 498.4 331 69.2
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 8.6e-138 494.2 338 70.1
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.1e-137 493.8 332 69.6
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 2.5e-137 492.7 336 70.5
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 5.6e-137 491.5 344 68.3
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 8.0e-136 487.6 332 71.4
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.4e-135 486.9 313 71.6
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.8e-135 486.5 326 71.5
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 8.9e-135 484.2 349 67.0
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 5.8e-134 481.5 344 68.0
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.3e-133 480.3 338 69.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.4e-132 476.9 392 61.2
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.1e-131 473.0 340 65.6
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 2.5e-129 466.1 338 66.9
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 4.0e-127 458.8 344 62.8
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-123 445.7 375 62.7
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 3.0e-122 442.6 288 72.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 3.9e-122 442.2 290 72.8
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.1e-121 440.7 289 72.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.0e-118 429.9 343 61.2
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 4.6e-115 418.7 339 62.5
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 5.6e-113 411.8 305 65.9
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.3e-113 411.4 343 60.9
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.7e-106 390.2 344 59.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.1e-103 380.9 347 56.2
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 5.3e-103 378.6 341 56.6
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.8e-102 375.2 354 57.9
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 8.7e-98 361.3 345 56.5
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 6.9e-95 351.7 322 53.7
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.2e-94 350.9 339 55.5
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.6e-94 349.7 276 61.6
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.3e-89 332.4 347 53.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 6.2e-88 328.6 221 68.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 9.0e-87 324.7 198 74.7
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 2.2e-85 320.1 347 47.3
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 3.3e-81 306.2 339 51.0
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.0e-78 297.0 344 50.0
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 7.2e-76 288.5 353 44.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-73 280.8 566 35.0
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 3.5e-62 243.0 533 33.0
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.7e-61 240.7 188 59.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.1e-60 238.0 318 45.0
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 7.4e-57 225.3 588 30.1
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 9.1e-55 218.4 186 61.8
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 8.5e-53 211.8 161 65.2
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.3e-37 161.4 147 51.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 6.1e-35 152.5 288 34.4
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.8e-34 151.0 288 34.4
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 2.7e-30 137.1 90 68.9
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.3e-29 134.0 103 63.1
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 5.2e-26 122.9 87 64.4
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.1e-18 98.6 58 79.3
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 3.4e-17 93.6 68 61.8
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 7.5e-17 92.4 58 75.9
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.3e-16 91.7 51 82.4
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.6e-14 84.7 463 23.5
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 6.2e-11 72.8 41 78.0
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-10 71.6 41 75.6
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.4e-09 66.6 53 60.4
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 5.8e-09 66.2 43 62.8


User provided reference genes

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