Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1882.5 1057 100.0
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.1e-237 826.6 1046 50.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 8.3e-234 814.7 1054 49.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.6e-227 791.6 881 54.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 7.6e-227 791.6 885 55.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.4e-226 788.5 884 54.9
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.1e-225 785.0 896 53.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.3e-223 780.0 914 53.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.3e-222 775.8 847 54.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.4e-220 770.0 953 49.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.1e-220 769.6 909 52.9
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.5e-219 767.3 909 52.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.9e-217 760.4 892 52.9
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.6e-213 747.3 888 51.8
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.8e-212 743.8 903 51.9
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.4e-209 733.4 878 51.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.4e-209 733.4 894 50.2
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.2e-209 732.6 903 50.6
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.2e-208 731.1 905 49.8
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 4.6e-208 729.2 885 50.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.3e-207 727.6 902 50.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.3e-207 726.9 891 51.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.9e-206 723.8 905 50.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.4e-204 717.6 905 50.4
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.4e-202 708.8 903 49.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 6.4e-202 708.8 896 48.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 7.1e-201 705.3 903 49.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.6e-200 702.6 908 48.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-199 699.9 890 48.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.0e-199 699.9 908 48.1
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-198 698.0 911 49.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-198 697.6 906 48.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 5.6e-198 695.7 891 49.9
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.8e-197 693.3 919 49.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.7e-197 693.0 902 49.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.7e-197 693.0 911 49.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-196 690.6 902 48.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.6e-195 686.8 918 49.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.8e-195 685.6 895 48.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.6e-195 685.3 890 48.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 4.9e-194 682.6 945 46.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.1e-193 681.4 894 48.4
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.5e-193 680.2 925 48.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 7.9e-192 675.2 898 46.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.7e-191 672.2 925 49.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-190 669.8 909 46.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.3e-190 669.5 906 47.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 5.7e-190 669.1 888 47.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.6e-189 667.5 894 47.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.8e-188 664.1 671 59.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.9e-188 662.1 911 45.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.5e-187 661.0 901 48.2
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.4e-187 659.8 895 47.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.4e-187 659.8 894 47.0
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.3e-186 657.9 899 48.2
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 3.8e-186 656.4 886 48.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.0e-186 656.0 780 53.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-185 653.7 884 46.8
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.7e-183 645.6 901 47.9
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-182 644.8 894 48.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-182 643.7 861 45.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.7e-181 641.0 886 46.4
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.2e-181 640.6 904 46.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-180 637.5 861 45.4
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.1e-180 636.7 908 45.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.2e-178 630.6 872 46.4
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.9e-178 630.2 901 46.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.0e-178 629.4 903 47.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-177 627.1 847 45.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.5e-177 627.1 899 45.1
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.1e-176 624.0 909 46.5
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.9e-176 622.1 890 47.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.0e-175 620.2 856 47.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-173 614.8 857 46.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-173 614.4 890 45.7
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.7e-173 614.4 895 46.4
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.7e-173 614.4 888 46.4
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-172 610.5 812 48.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.3e-170 604.7 916 44.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.0e-170 602.8 872 45.5
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.6e-168 596.7 915 46.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.7e-168 596.3 811 47.3
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.0e-167 593.6 845 44.5
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.9e-167 593.2 911 44.3
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.9e-167 593.2 971 42.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.3e-165 585.9 843 44.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 9.1e-164 582.0 920 44.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.6e-163 581.3 929 44.3
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.0e-163 580.9 908 44.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.7e-163 578.9 915 45.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.9e-161 574.3 837 43.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.5e-161 573.9 845 45.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 7.2e-161 572.4 895 45.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.1e-160 570.9 891 45.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-158 563.5 957 42.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.4e-158 563.1 901 44.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 3.2e-153 547.0 904 42.8
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.0e-151 542.0 889 43.3
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-149 534.6 903 43.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.2e-149 534.3 679 51.0
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.3e-149 532.3 900 42.0
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-148 530.8 890 42.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.1e-148 530.4 885 40.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.1e-148 530.4 879 43.8
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 5.4e-148 529.6 886 45.6
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.5e-145 521.5 901 41.8
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.3e-145 520.4 857 46.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.2e-145 520.0 867 45.2
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 9.5e-145 518.8 853 45.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 8.9e-143 512.3 845 42.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.5e-142 511.5 851 45.1
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.4e-142 510.0 905 43.6
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.8e-140 504.6 851 43.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 5.4e-140 503.1 883 43.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 6.6e-138 496.1 606 52.3
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.5e-137 492.3 903 40.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 8.0e-136 489.2 909 41.6
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.4e-135 488.4 894 40.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.3e-130 471.1 869 42.2
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.3e-127 461.1 849 44.2
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-126 458.4 849 44.2
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 3.4e-126 457.2 851 43.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 3.4e-126 457.2 851 43.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.4e-126 457.2 908 41.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 5.8e-126 456.4 910 42.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 9.8e-126 455.7 905 41.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-125 455.3 680 43.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.2e-125 454.5 904 41.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-125 454.1 884 42.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 6.4e-125 453.0 692 47.5
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-124 451.8 706 46.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-124 451.8 905 41.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.4e-124 451.8 875 40.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 6.4e-117 426.4 836 39.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.5e-113 414.5 497 52.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.4e-110 403.7 853 37.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 6.4e-109 399.8 852 36.7
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.6e-104 384.0 427 54.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.0e-103 380.6 634 43.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.3e-103 380.2 961 35.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.2e-102 379.0 824 38.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.0e-102 378.3 820 36.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.8e-94 350.1 874 33.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 7.9e-91 339.7 578 46.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 3.0e-90 337.8 1001 34.3
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 4.5e-86 323.9 585 40.0
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-85 320.9 409 49.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.2e-80 303.1 879 32.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.7e-75 288.1 864 32.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.9e-73 282.0 338 50.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.7e-73 279.6 802 33.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.9e-70 270.4 824 32.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-63 249.2 376 43.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.0e-61 243.0 281 51.6
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.0e-58 233.0 359 46.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.7e-53 215.7 782 30.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.4e-52 209.9 273 52.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.1e-47 196.4 388 39.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 7.0e-47 193.7 271 46.9
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-45 189.9 517 33.7
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 6.8e-42 177.2 241 46.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.7e-41 174.1 286 42.0
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.7e-38 165.2 221 49.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.5e-38 164.9 526 27.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 4.5e-38 164.5 110 66.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.5e-33 149.4 223 42.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.1e-28 133.3 145 49.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 8.9e-26 123.6 122 51.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-25 123.2 269 38.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.6e-19 102.8 112 52.7
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.2e-16 92.4 166 36.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-15 90.1 182 34.6
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-13 83.2 118 46.6
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-12 80.1 49 69.4
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.8e-10 72.8 72 72.2
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.8e-10 70.9 105 37.1
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.4e-09 68.6 94 40.4
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.8e-09 67.8 127 32.3
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 7.1e-07 60.8 74 56.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.7e-06 58.9 83 33.7


User provided reference genes

Program Settings