Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 5.7e-172 607.4 299 100.0
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 2.7e-129 465.7 269 83.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 5.1e-128 461.5 268 79.9
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 6.6e-128 461.1 280 79.3
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 6.6e-128 461.1 270 80.4
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.9e-127 459.5 270 81.1
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 2.5e-127 459.1 268 81.7
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 5.6e-127 458.0 270 79.3
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 7.3e-127 457.6 268 80.2
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 9.6e-127 457.2 269 80.3
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 2.1e-126 456.1 268 79.1
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.6e-126 455.3 268 80.2
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.6e-126 455.3 268 80.2
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 6.2e-126 454.5 271 79.0
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 8.1e-126 454.1 268 81.3
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 8.1e-126 454.1 269 78.4
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.1e-125 453.8 271 79.3
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.4e-125 453.4 272 79.0
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 3.1e-125 452.2 269 80.7
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 4.0e-125 451.8 268 79.5
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.2e-125 451.4 274 78.8
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 6.9e-125 451.1 268 79.9
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 1.2e-124 450.3 268 79.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 2.0e-124 449.5 274 78.1
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 2.6e-124 449.1 268 79.1
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 4.4e-124 448.4 269 79.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 5.8e-124 448.0 268 77.6
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.8e-124 448.0 268 79.1
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 7.6e-124 447.6 268 78.7
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 7.6e-124 447.6 268 78.7
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 9.9e-124 447.2 276 77.5
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 1.3e-123 446.8 271 77.1
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 1.3e-123 446.8 270 77.4
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.7e-123 446.4 270 77.0
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.7e-123 446.4 270 77.4
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.7e-123 446.4 270 79.6
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 2.2e-123 446.0 268 78.4
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 2.2e-123 446.0 268 78.4
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.2e-123 446.0 273 77.7
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 2.2e-123 446.0 270 78.5
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 2.9e-123 445.7 273 77.7
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 3.8e-123 445.3 270 76.7
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 3.8e-123 445.3 268 78.4
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 4.9e-123 444.9 268 78.7
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 8.4e-123 444.1 274 77.7
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 8.4e-123 444.1 269 76.6
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 8.4e-123 444.1 269 78.1
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 8.4e-123 444.1 269 78.1
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 1.4e-122 443.4 269 79.9
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.9e-122 443.0 268 79.5
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 1.9e-122 443.0 270 77.8
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 3.2e-122 442.2 270 77.4
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 3.2e-122 442.2 268 77.2
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 3.2e-122 442.2 269 77.7
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 5.4e-122 441.4 268 78.7
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 7.1e-122 441.0 268 79.1
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 9.3e-122 440.7 269 77.3
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 9.3e-122 440.7 268 78.4
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 9.3e-122 440.7 268 78.0
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.2e-121 440.3 272 77.6
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.2e-121 440.3 268 78.7
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.6e-121 439.9 269 77.7
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.1e-121 439.5 272 77.9
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 2.1e-121 439.5 268 76.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 3.5e-121 438.7 268 79.1
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.6e-121 438.3 291 72.9
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 4.6e-121 438.3 271 78.2
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 4.6e-121 438.3 269 77.0
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 6.0e-121 438.0 269 77.3
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 6.0e-121 438.0 270 77.0
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 6.0e-121 438.0 273 76.6
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 7.8e-121 437.6 268 77.6
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.0e-120 437.2 270 78.1
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.0e-120 437.2 316 68.4
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.7e-120 436.4 269 77.0
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 2.3e-120 436.0 281 73.3
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.0e-120 435.6 268 78.7
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 3.9e-120 435.3 275 75.3
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 5.1e-120 434.9 271 74.5
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 8.7e-120 434.1 269 76.2
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.5e-119 433.3 281 72.6
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.5e-119 433.3 269 76.6
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 5.6e-119 431.4 270 77.4
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 5.6e-119 431.4 269 76.2
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.6e-118 428.7 280 75.4
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 6.2e-118 427.9 269 75.8
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.1e-117 427.2 274 75.2
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.4e-117 426.8 269 74.3
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.8e-117 426.4 274 75.2
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 3.1e-117 425.6 269 76.6
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 7.6e-116 421.0 274 74.5
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.2e-115 419.5 283 73.5
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 8.4e-115 417.5 277 73.3
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 8.4e-115 417.5 268 73.5
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 1.1e-114 417.2 276 71.7
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.4e-114 416.8 274 70.8
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.9e-114 416.4 281 70.1
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 2.4e-114 416.0 273 75.1
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 1.6e-113 413.3 271 74.2
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.8e-112 409.8 270 74.4
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 3.9e-112 408.7 304 67.4
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 6.7e-112 407.9 272 71.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.7e-112 407.9 268 71.6
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 1.1e-111 407.1 269 72.1
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.9e-111 406.4 273 71.8
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 2.5e-111 406.0 271 72.3
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 2.8e-110 402.5 268 71.6
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 2.8e-110 402.5 269 71.7
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 1.1e-109 400.6 268 70.9
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 3.4e-108 395.6 272 72.8
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.6e-105 386.7 278 70.9
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-100 370.5 274 67.5
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 2.0e-100 369.8 267 64.4
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 4.5e-100 368.6 270 63.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 9.3e-98 360.9 273 62.6
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 3.3e-95 352.4 271 64.2
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 4.1e-93 345.5 270 64.1
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 8.5e-91 337.8 206 77.7
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.3e-86 321.6 269 60.6
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 2.9e-83 312.8 204 70.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.2e-81 307.4 275 57.1
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.2e-81 307.4 303 54.8
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.7e-78 297.0 274 54.4
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.7e-78 295.8 190 75.8
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 9.1e-77 291.2 192 75.5
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 6.7e-72 275.0 177 75.7
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 3.1e-69 266.2 271 53.5
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 9.1e-69 264.6 264 54.9
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.3e-67 260.8 157 80.3
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 3.2e-66 256.1 285 50.2
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 9.4e-66 254.6 206 62.1
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 2.7e-65 253.1 282 49.3
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 5.2e-64 248.8 220 59.1
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 2.7e-57 226.5 280 47.1
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.4e-48 197.6 269 45.4
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 1.5e-47 194.1 148 66.2
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 5.7e-47 192.2 116 71.6
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.6e-41 174.1 157 61.8
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 8.9e-40 168.3 115 75.7
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 7.5e-39 165.2 156 59.0
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 8.9e-32 141.7 87 78.2
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 3.6e-25 119.8 70 81.4
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 9.9e-23 111.7 71 71.8
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 3.3e-18 96.7 62 66.1
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 5.4e-13 79.3 107 47.7
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 2.1e-09 67.4 44 70.5
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 2.4e-08 63.9 43 65.1


User provided reference genes

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