Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.5e-68 262.7 129 100.0
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 8.9e-21 104.0 113 49.6
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 5.7e-20 101.3 113 47.8
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 5.7e-20 101.3 116 50.9
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 8.3e-19 97.4 123 49.6
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 1.1e-18 97.1 111 49.5
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.4e-18 96.7 111 48.6
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 7.0e-18 94.4 127 47.2
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.6e-17 93.2 101 48.5
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 2.0e-17 92.8 82 57.3
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.0e-17 92.8 118 45.8
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 7.8e-17 90.9 82 56.1
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 7.8e-17 90.9 81 53.1
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 7.8e-17 90.9 111 45.0
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 1.0e-16 90.5 120 43.3
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 1.0e-16 90.5 120 44.2
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.3e-16 90.1 85 54.1
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.3e-16 90.1 85 54.1
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 6.6e-16 87.8 121 46.3
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 6.6e-16 87.8 104 50.0
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 8.6e-16 87.4 117 46.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-15 87.0 110 44.5
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.5e-15 86.7 118 43.2
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 1.9e-15 86.3 117 47.0
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.5e-15 85.9 107 49.5
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 3.3e-15 85.5 108 45.4
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 7.3e-15 84.3 122 42.6
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 1.2e-14 83.6 122 41.8
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 1.2e-14 83.6 120 43.3
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.6e-14 83.2 82 51.2
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 2.8e-14 82.4 94 54.3
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.8e-14 82.4 124 44.4
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.8e-14 82.4 78 53.8
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 3.6e-14 82.0 81 50.6
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 3.6e-14 82.0 117 43.6
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 3.6e-14 82.0 109 43.1
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.7e-14 81.6 111 43.2
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 6.2e-14 81.3 69 55.1
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 8.0e-14 80.9 112 42.9
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-13 80.5 110 41.8
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 1.1e-13 80.5 122 41.8
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 1.1e-13 80.5 75 53.3
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 1.4e-13 80.1 69 55.1
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 1.8e-13 79.7 119 41.2
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.8e-13 79.7 122 43.4
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 2.3e-13 79.3 67 58.2
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.3e-13 79.3 118 40.7
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 4.0e-13 78.6 90 50.0
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 4.0e-13 78.6 84 50.0
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 4.0e-13 78.6 122 40.2
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.0e-13 78.6 75 53.3
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 4.0e-13 78.6 103 40.8
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 4.0e-13 78.6 107 44.9
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 5.2e-13 78.2 98 48.0
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 6.8e-13 77.8 119 44.5
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 6.8e-13 77.8 109 43.1
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.5e-12 76.6 68 55.9
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.5e-12 76.6 118 38.1
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.0e-12 76.3 78 50.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.6e-12 75.9 82 50.0
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.6e-12 75.9 116 38.8
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 2.6e-12 75.9 76 50.0
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.4e-12 75.5 108 40.7
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 4.4e-12 75.1 121 40.5
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.8e-12 74.7 108 40.7
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 5.8e-12 74.7 108 39.8
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 7.5e-12 74.3 91 45.1
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 9.8e-12 73.9 82 47.6
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 9.8e-12 73.9 114 38.6
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 9.8e-12 73.9 93 44.1
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.7e-11 73.2 78 47.4
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.7e-11 73.2 113 40.7
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.7e-11 73.2 111 40.5
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 3.7e-11 72.0 98 41.8
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 4.9e-11 71.6 75 48.0
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 8.3e-11 70.9 66 57.6
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.1e-10 70.5 98 43.9
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 1.4e-10 70.1 67 53.7
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-10 69.7 75 45.3
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.9e-10 69.7 113 41.6
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 1.9e-10 69.7 113 41.6
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 2.4e-10 69.3 113 35.4
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.4e-10 69.3 69 53.6
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.4e-10 69.3 126 41.3
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 3.2e-10 68.9 73 47.9
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 3.2e-10 68.9 102 42.2
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 4.1e-10 68.6 68 54.4
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 4.1e-10 68.6 111 39.6
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.2e-09 67.0 91 42.9
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.2e-09 67.0 82 45.1
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 2.7e-09 65.9 117 37.6
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 4.6e-09 65.1 73 45.2
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.6e-09 65.1 119 36.1
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 3.0e-08 62.4 58 51.7
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 3.9e-08 62.0 67 47.8
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.9e-08 62.0 75 44.0
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.9e-08 62.0 75 44.0
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 5.0e-08 61.6 65 50.8
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 6.6e-08 61.2 65 47.7
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 6.6e-08 61.2 121 33.9
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 8.6e-08 60.8 117 35.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 8.6e-08 60.8 65 47.7
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.5e-07 60.1 122 37.7
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.5e-07 60.1 122 37.7
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-07 59.7 56 51.8
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 2.5e-07 59.3 117 38.5
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 2.5e-07 59.3 69 47.8
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 4.3e-07 58.5 112 37.5
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 4.3e-07 58.5 65 47.7
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 4.3e-07 58.5 112 37.5
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 9.5e-07 57.4 65 46.2
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.6e-06 56.6 61 52.5
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 2.8e-06 55.8 102 33.3
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 6.2e-06 54.7 57 49.1
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 8.1e-06 54.3 61 50.8


User provided reference genes

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