Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 0.0e+00 1091.3 554 100.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-170 603.6 537 59.4
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.1e-168 597.4 492 64.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 5.6e-165 585.1 559 58.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 5.8e-162 575.1 533 59.3
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.9e-162 574.3 559 55.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.5e-157 560.5 578 55.2
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.1e-155 554.3 502 56.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 3.8e-153 545.8 516 57.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.0e-150 537.7 497 60.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.8e-150 537.0 495 58.0
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 3.0e-150 536.2 496 59.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 8.7e-150 534.6 496 58.3
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 4.3e-149 532.3 549 53.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 5.7e-149 531.9 537 55.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.8e-148 529.6 513 58.5
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.8e-147 526.9 503 58.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.4e-147 526.6 496 58.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 9.0e-147 524.6 531 55.0
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.0e-146 523.5 527 55.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.1e-144 517.7 534 54.5
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.7e-143 513.1 538 53.0
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.6e-143 512.7 519 54.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.1e-143 511.9 538 53.2
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-142 510.4 529 54.8
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.1e-142 508.8 492 55.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.8e-140 503.1 541 54.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.4e-139 500.7 556 51.8
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 5.3e-139 498.8 490 56.3
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 5.3e-139 498.8 490 56.3
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 9.1e-139 498.0 507 54.6
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 9.1e-139 498.0 476 56.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.2e-138 497.7 472 59.1
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 5.5e-136 488.8 530 51.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 9.4e-136 488.0 499 53.1
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.2e-135 487.6 500 53.6
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.0e-134 484.6 555 51.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.3e-134 483.4 578 50.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 3.0e-134 483.0 549 50.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 5.1e-134 482.3 561 51.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.5e-133 480.7 550 50.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 7.4e-133 478.4 501 54.1
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.8e-132 476.5 546 48.9
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.8e-132 476.5 494 53.4
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 6.3e-132 475.3 503 51.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.1e-131 474.6 476 53.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.1e-131 474.6 485 54.8
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.8e-131 473.8 443 56.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 5.3e-131 472.2 535 48.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 7.0e-131 471.9 497 53.9
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 9.1e-131 471.5 494 54.0
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 9.1e-131 471.5 497 51.9
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.5e-130 470.7 536 49.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.9e-129 466.5 540 49.1
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.8e-129 466.1 496 52.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.9e-128 463.8 495 51.5
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.7e-127 459.9 552 48.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.6e-127 459.5 569 47.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.3e-126 456.8 570 47.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.2e-126 455.7 428 58.4
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.0e-125 453.8 480 52.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.6e-125 453.4 577 47.8
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 7.4e-125 451.8 550 50.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.4e-123 446.8 501 52.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.6e-122 444.1 537 50.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.0e-122 443.7 423 56.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.8e-121 439.5 407 58.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.2e-120 436.4 422 55.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.1e-119 433.7 495 49.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.4e-118 431.0 487 49.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.8e-118 430.6 489 49.7
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 9.7e-117 424.9 524 48.7
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 2.8e-116 423.3 485 49.1
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-115 421.4 549 46.1
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.1e-115 421.4 583 44.6
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.1e-115 419.5 546 46.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.1e-115 419.5 480 50.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.1e-115 418.3 503 47.5
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.2e-114 417.9 437 52.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.6e-114 417.5 432 53.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 5.9e-114 415.6 571 43.3
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.0e-110 403.3 524 44.3
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.0e-110 403.3 527 45.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.2e-110 402.5 525 43.4
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.2e-109 401.4 387 58.9
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 3.7e-108 396.4 462 49.6
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.4e-107 394.4 457 49.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-105 387.1 522 43.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.8e-105 386.3 511 46.6
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.4e-101 373.2 503 45.3
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.8e-100 370.2 501 43.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.8e-100 370.2 376 52.4
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.1e-99 368.2 459 44.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.4e-99 367.1 496 44.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 4.1e-99 366.3 486 42.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-96 358.2 491 44.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.5e-93 345.5 493 42.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.5e-93 345.5 493 42.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 7.5e-93 345.5 493 42.8
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 8.3e-92 342.0 492 42.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.2e-91 340.1 493 42.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 4.1e-91 339.7 485 43.3
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 8.6e-89 332.0 487 42.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.6e-85 320.5 487 40.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.4e-85 319.7 380 53.7
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.2e-84 317.4 500 42.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.4e-83 313.9 484 40.5
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 9.5e-80 302.0 233 63.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.2e-78 296.2 497 39.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.4e-76 289.3 388 46.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 7.1e-75 285.8 300 53.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.9e-73 280.0 327 54.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.6e-71 274.6 281 59.1
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.9e-69 265.4 500 38.0
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.9e-65 253.4 355 43.7
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.9e-57 226.9 174 62.6
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.5e-56 224.2 314 41.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 9.6e-56 222.2 173 59.0
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.9e-54 216.1 358 39.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.7e-52 211.5 333 40.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-43 181.0 246 41.9
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 9.3e-43 179.1 337 35.0
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.0e-41 174.1 139 56.8
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.2e-35 153.7 374 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.1e-34 151.4 321 32.7
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.7e-34 151.0 339 31.0
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 7.9e-34 149.4 231 39.4
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 6.3e-31 139.8 132 54.5
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.9e-29 133.3 184 43.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.3e-28 132.1 217 37.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.8e-28 130.6 277 32.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.4e-27 125.9 122 61.5
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.1e-25 120.2 89 53.9
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.1e-25 120.2 89 53.9
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.3e-24 117.1 318 30.2
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-22 111.7 492 24.8
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-22 111.7 492 24.8
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.8e-22 111.7 492 24.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-21 109.0 500 24.6
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-21 107.8 100 59.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-20 105.9 492 24.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.0e-20 105.9 492 24.0
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-20 104.0 271 29.2


User provided reference genes

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