Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.5e-101 372.1 185 100.0
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.4e-67 259.2 186 74.7
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.4e-67 259.2 186 74.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.1e-64 250.4 166 75.9
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 7.9e-63 244.2 172 73.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.3e-62 242.7 178 73.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 5.1e-62 241.5 179 73.2
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 3.1e-59 232.3 177 65.5
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.0e-59 231.9 169 68.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.0e-59 231.9 169 68.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-58 230.3 169 68.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-58 230.3 169 68.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.0e-58 229.6 169 68.0
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.0e-57 227.3 183 61.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-57 226.9 170 65.3
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.1e-56 223.8 188 57.4
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 9.3e-56 220.7 188 61.7
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.1e-55 219.5 189 59.3
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.8e-54 216.5 188 55.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.3e-54 216.1 152 68.4
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 3.0e-54 215.7 188 58.5
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.5e-53 213.4 172 62.2
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 5.7e-53 211.5 162 64.8
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 9.6e-53 210.7 158 66.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.6e-52 209.9 170 62.4
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 2.1e-52 209.5 173 61.8
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.8e-52 209.1 211 55.9
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 8.2e-52 207.6 157 64.3
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.4e-51 206.8 162 64.8
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.4e-51 206.8 159 64.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.8e-51 206.5 160 65.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 2.4e-51 206.1 172 60.5
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.1e-51 205.3 182 58.8
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.0e-51 204.1 161 63.4
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 9.0e-51 204.1 145 71.0
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.0e-50 203.0 171 62.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 5.9e-50 201.4 191 55.0
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 5.9e-50 201.4 159 62.3
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.0e-49 200.7 157 62.4
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.3e-49 200.3 152 65.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-49 200.3 159 62.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-49 200.3 159 62.3
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.7e-49 199.9 184 57.1
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.2e-49 199.5 156 62.8
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.9e-49 199.1 152 65.8
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.8e-49 198.7 168 60.7
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 5.0e-49 198.4 130 70.8
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 6.5e-49 198.0 161 59.6
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 6.5e-49 198.0 160 61.9
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 8.5e-49 197.6 159 60.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 8.5e-49 197.6 159 60.4
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 8.5e-49 197.6 130 70.8
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.9e-48 196.4 156 61.5
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.5e-48 196.1 155 63.9
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.5e-48 196.1 169 58.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 4.2e-48 195.3 161 64.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.5e-48 194.9 153 62.7
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.2e-48 194.5 170 58.8
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 9.3e-48 194.1 169 56.8
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 3.6e-47 192.2 121 74.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.6e-47 191.8 177 55.4
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 4.6e-47 191.8 177 55.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 4.6e-47 191.8 157 61.1
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.1e-47 191.4 178 54.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.8e-46 189.9 178 54.5
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.8e-46 189.9 126 70.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.9e-46 188.7 158 62.0
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 8.7e-46 187.6 172 57.6
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.5e-45 186.0 170 55.3
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.3e-45 185.7 180 51.1
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 5.7e-45 184.9 157 56.1
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 7.4e-45 184.5 161 55.3
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 9.7e-45 184.1 154 59.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-44 183.7 157 54.8
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.3e-44 183.7 151 58.3
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.3e-44 183.7 158 60.8
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.3e-44 183.7 158 60.8
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.2e-44 183.0 157 54.8
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 4.8e-44 181.8 157 54.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 4.8e-44 181.8 157 54.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 4.8e-44 181.8 157 54.1
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 6.3e-44 181.4 162 53.1
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 6.3e-44 181.4 154 62.3
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.4e-43 180.3 172 51.2
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.8e-43 179.9 160 53.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 5.3e-43 178.3 152 59.9
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 6.9e-43 177.9 156 59.0
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 3.4e-42 175.6 175 51.4
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 5.0e-41 171.8 183 47.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.1e-40 170.6 153 58.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.2e-39 167.2 126 61.9
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.8e-38 163.3 166 48.8
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.9e-38 162.2 162 53.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 5.1e-38 161.8 186 47.8
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.7e-38 161.4 157 56.1
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 8.8e-38 161.0 134 61.9
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.0e-37 159.8 167 50.9
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.0e-37 159.8 162 53.1
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.7e-36 155.6 126 55.6
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.1e-35 154.1 171 47.4
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 3.1e-35 152.5 128 61.7
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.0e-34 149.8 144 56.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 3.4e-34 149.1 146 54.1
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 3.4e-34 149.1 136 58.1
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.0e-33 147.5 145 56.6
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 9.4e-32 141.0 110 66.4
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.1e-31 139.8 131 51.1
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.4e-30 137.1 102 60.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 6.7e-30 134.8 104 60.6
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 9.7e-29 131.0 111 58.6
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 6.3e-28 128.3 99 65.7
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.8e-27 126.7 85 70.6
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.1e-27 125.9 95 66.3
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.2e-24 115.9 127 52.8
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.2e-24 114.8 80 61.2
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.0e-22 110.9 158 43.7
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 1.5e-21 107.1 97 58.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 7.2e-16 88.2 69 59.4
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.3e-12 77.4 125 40.0
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 6.3e-12 75.1 123 37.4
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 7.0e-11 71.6 91 47.3
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.2e-10 70.9 100 47.0
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.8e-09 65.9 86 43.0
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 6.5e-09 65.1 46 58.7
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 6.5e-09 65.1 63 49.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 8.6e-09 64.7 63 49.2
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 8.6e-09 64.7 63 49.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-08 64.3 74 45.9
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.5e-08 63.9 121 38.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 4.0e-06 55.8 121 34.7
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 6.8e-06 55.1 120 35.0


User provided reference genes

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