Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 4.7e-63 244.6 144 100.0
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.6e-31 139.8 138 58.0
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.6e-31 138.7 137 61.3
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 4.4e-29 131.7 139 54.0
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.3e-28 130.2 137 50.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.7e-28 129.8 135 57.0
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.9e-28 129.0 137 56.2
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 8.4e-28 127.5 142 58.5
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 5.4e-27 124.8 137 55.5
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 7.1e-27 124.4 142 56.3
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 9.2e-27 124.0 138 58.7
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 9.2e-27 124.0 136 40.4
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.2e-26 123.6 143 52.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.6e-26 123.2 136 56.6
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.6e-26 123.2 137 56.9
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.6e-26 123.2 142 56.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.1e-26 122.9 137 54.7
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 4.6e-26 121.7 133 54.1
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 4.6e-26 121.7 137 55.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 6.0e-26 121.3 137 52.6
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 7.8e-26 120.9 137 52.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 7.8e-26 120.9 138 58.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.0e-25 120.6 130 59.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.3e-25 120.2 137 53.3
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.3e-25 120.2 138 56.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.7e-25 119.8 137 50.4
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.7e-25 119.8 137 56.2
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.7e-25 119.8 134 55.2
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.7e-25 119.8 134 55.2
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.7e-25 119.8 127 61.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.3e-25 119.4 133 51.1
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 5.1e-25 118.2 142 53.5
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 5.1e-25 118.2 137 49.6
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.1e-25 118.2 137 56.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 5.1e-25 118.2 138 55.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 6.6e-25 117.9 137 54.0
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 6.6e-25 117.9 138 55.8
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 8.7e-25 117.5 135 51.9
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 8.7e-25 117.5 137 52.6
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.5e-24 116.7 134 55.2
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.5e-24 116.7 130 56.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.9e-24 116.3 137 51.1
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.3e-24 115.5 139 57.6
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 3.3e-24 115.5 137 54.0
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.3e-24 115.2 137 53.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.3e-24 115.2 137 53.3
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.6e-24 114.8 142 52.1
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 9.6e-24 114.0 138 55.1
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 9.6e-24 114.0 131 52.7
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.2e-23 113.6 137 54.0
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.2e-23 113.6 136 55.9
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.6e-23 113.2 137 51.8
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 2.1e-23 112.8 137 52.6
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.1e-23 112.8 135 55.6
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 2.1e-23 112.8 130 56.9
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.1e-23 112.8 137 52.6
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.8e-23 112.5 136 53.7
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.8e-23 112.5 140 53.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.6e-23 112.1 140 52.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.7e-23 111.7 137 54.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 6.2e-23 111.3 130 57.7
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 6.2e-23 111.3 137 53.3
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.1e-23 110.9 137 54.0
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.1e-22 110.5 131 55.7
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.1e-22 110.5 132 53.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.4e-22 110.2 130 56.9
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-22 110.2 126 55.6
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 3.1e-22 109.0 81 61.7
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 3.1e-22 109.0 137 52.6
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 4.0e-22 108.6 129 53.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 4.0e-22 108.6 136 51.5
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.2e-22 108.2 139 55.4
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 6.9e-22 107.8 124 37.9
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 6.9e-22 107.8 137 54.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 9.0e-22 107.5 87 51.7
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 9.0e-22 107.5 123 60.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.5e-21 106.7 128 56.2
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.5e-21 106.7 127 56.7
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.0e-21 106.3 143 37.8
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.6e-21 105.9 123 56.1
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 3.4e-21 105.5 137 51.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.4e-21 105.1 135 51.1
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 7.6e-21 104.4 140 38.6
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 9.9e-21 104.0 129 54.3
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 9.9e-21 104.0 88 53.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 8.4e-20 100.9 77 58.4
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.1e-19 100.5 129 52.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.1e-19 100.5 121 57.0
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 2.4e-19 99.4 135 44.4
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.6e-18 96.7 115 54.8
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 4.6e-18 95.1 76 48.7
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.0e-17 94.0 121 52.1
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.0e-17 94.0 134 50.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 2.3e-17 92.8 119 56.3
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.9e-17 92.0 116 56.9
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 5.1e-17 91.7 129 53.5
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.1e-17 91.7 134 49.3
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.1e-17 91.7 134 49.3
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 8.7e-17 90.9 135 47.4
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 8.7e-17 90.9 135 48.1
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.1e-16 90.5 135 46.7
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.9e-16 89.7 135 46.7
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.5e-16 89.4 137 45.3
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 2.5e-16 89.4 132 47.7
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.5e-16 89.4 134 47.0
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 4.3e-16 88.6 95 67.4
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.6e-15 86.7 112 55.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 4.0e-14 82.0 136 32.4
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 5.3e-14 81.6 114 38.6
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.2e-13 80.5 118 33.9
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.2e-13 80.5 118 33.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.2e-13 80.5 118 33.9
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.4e-13 79.0 118 33.9
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 4.5e-13 78.6 124 33.1
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 5.8e-13 78.2 118 33.1
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 5.8e-13 78.2 118 33.1
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 5.8e-13 78.2 116 46.6
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 7.6e-13 77.8 128 49.2
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 9.9e-13 77.4 137 40.9
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.8e-12 75.5 136 46.3
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.1e-11 73.9 100 55.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.4e-11 73.6 130 43.8
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 3.0e-09 65.9 69 44.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 3.9e-09 65.5 125 36.0
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 5.6e-08 61.6 137 40.1
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.3e-07 60.5 99 30.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.6e-07 60.1 93 46.2
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.8e-07 59.3 73 38.4
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 1.4e-06 57.0 142 30.3


User provided reference genes

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