Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.0e-69 265.8 143 100.0
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.5e-40 167.9 121 74.4
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 7.2e-40 167.5 119 72.3
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.2e-39 166.8 118 70.3
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 2.1e-39 166.0 122 72.1
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.1e-39 166.0 144 67.4
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.6e-39 165.2 119 68.9
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 4.7e-39 164.9 142 61.3
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.7e-39 164.9 121 73.6
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 6.1e-39 164.5 119 69.7
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 8.0e-39 164.1 149 61.7
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.0e-39 164.1 121 72.7
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 8.0e-39 164.1 119 68.9
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.0e-39 164.1 125 69.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.0e-38 163.7 143 63.6
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.0e-38 163.7 120 68.3
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.4e-38 163.3 119 68.9
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.4e-38 163.3 119 69.7
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.8e-38 162.9 121 71.1
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.8e-38 162.9 144 63.2
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.8e-38 162.9 141 63.8
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.0e-38 162.2 141 63.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 4.0e-38 161.8 142 64.1
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 4.0e-38 161.8 145 63.4
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 4.0e-38 161.8 147 63.9
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 6.8e-38 161.0 147 59.2
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 6.8e-38 161.0 149 60.4
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 6.8e-38 161.0 119 68.9
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.8e-38 161.0 141 63.1
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 8.9e-38 160.6 140 62.1
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.2e-37 160.2 142 64.1
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-37 160.2 141 62.4
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.5e-37 159.8 144 63.2
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.5e-37 159.8 143 62.2
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.5e-37 159.8 144 60.4
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 2.0e-37 159.5 142 63.4
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.6e-37 159.1 142 63.4
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 3.4e-37 158.7 141 63.1
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 4.4e-37 158.3 144 60.4
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.7e-37 157.9 141 62.4
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 5.7e-37 157.9 120 68.3
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 5.7e-37 157.9 141 61.7
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 5.7e-37 157.9 143 61.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 5.7e-37 157.9 118 72.0
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 7.5e-37 157.5 143 62.2
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 7.5e-37 157.5 120 67.5
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 7.5e-37 157.5 139 62.6
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 7.5e-37 157.5 144 61.1
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 9.8e-37 157.1 133 61.7
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.3e-36 156.8 150 61.3
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.7e-36 156.4 141 63.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.7e-36 156.4 142 62.7
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.7e-36 156.4 109 72.5
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.2e-36 156.0 144 62.5
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.8e-36 155.6 114 68.4
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.8e-36 155.6 142 63.4
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.8e-36 155.6 147 59.9
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.8e-36 155.6 145 60.7
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.7e-36 155.2 129 62.0
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 4.9e-36 154.8 149 63.8
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 4.9e-36 154.8 148 61.5
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 4.9e-36 154.8 143 62.2
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.9e-36 154.8 146 60.3
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 4.9e-36 154.8 144 59.0
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 6.3e-36 154.5 142 64.1
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 8.3e-36 154.1 136 60.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 8.3e-36 154.1 143 60.1
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.1e-35 153.7 141 60.3
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-35 153.7 135 63.7
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.4e-35 153.3 146 60.3
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.4e-35 153.3 125 64.8
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.4e-35 153.3 111 72.1
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.4e-35 153.3 145 60.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.8e-35 152.9 88 84.1
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.8e-35 152.9 88 84.1
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.4e-35 152.5 146 58.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 3.1e-35 152.1 150 60.0
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.1e-35 151.8 143 56.6
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 5.4e-35 151.4 122 66.4
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.4e-35 151.4 146 58.2
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 5.4e-35 151.4 146 57.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 7.0e-35 151.0 111 68.5
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 7.0e-35 151.0 111 68.5
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 7.0e-35 151.0 120 64.2
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 9.2e-35 150.6 153 57.5
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.2e-35 150.6 119 63.0
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 9.2e-35 150.6 145 57.9
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 9.2e-35 150.6 137 60.6
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.2e-34 150.2 118 66.9
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.2e-34 150.2 143 58.0
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.2e-34 150.2 87 82.8
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.6e-34 149.8 147 63.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-34 149.8 149 59.1
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.6e-34 149.8 125 65.6
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 1.6e-34 149.8 140 62.1
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.0e-34 149.4 111 67.6
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.7e-34 149.1 141 58.2
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.7e-34 149.1 147 57.1
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 3.5e-34 148.7 149 59.1
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 3.5e-34 148.7 149 57.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.5e-34 148.7 120 65.8
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 4.5e-34 148.3 146 56.8
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 4.5e-34 148.3 148 56.8
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 4.5e-34 148.3 145 58.6
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 4.5e-34 148.3 145 58.6
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 4.5e-34 148.3 147 60.5
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 7.8e-34 147.5 149 58.4
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 7.8e-34 147.5 149 58.4
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 7.8e-34 147.5 139 59.7
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-33 146.7 146 56.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.7e-33 146.4 146 56.8
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.7e-33 146.4 143 60.1
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.3e-33 146.0 146 56.2
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 2.9e-33 145.6 136 60.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.8e-33 145.2 136 57.4
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 3.8e-33 145.2 144 56.9
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 6.6e-33 144.4 146 56.8
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 6.6e-33 144.4 145 56.6
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 6.6e-33 144.4 146 56.8
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 8.6e-33 144.1 145 56.6
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 8.6e-33 144.1 145 56.6
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-32 143.7 147 56.5
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-32 143.7 147 56.5
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.1e-32 143.7 147 56.5
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.1e-32 143.7 122 63.1
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.1e-32 143.7 138 58.7
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-32 142.9 147 55.1
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-32 142.9 147 55.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.9e-32 142.9 124 62.1
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-32 142.5 148 55.4
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-32 142.5 148 55.4
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.5e-32 142.5 148 55.4
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.5e-32 142.5 136 57.4
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 4.3e-32 141.7 141 55.3
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.3e-32 141.7 128 64.1
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 7.3e-32 141.0 147 55.1
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 7.3e-32 141.0 86 77.9
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.2e-31 140.2 142 60.6
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 8.0e-31 137.5 80 80.0
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.0e-29 132.9 80 76.2
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 2.6e-29 132.5 134 60.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.7e-28 129.8 117 65.0
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.9e-28 128.3 148 56.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 6.4e-28 127.9 78 75.6
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.4e-27 126.7 109 67.9
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.2e-26 123.6 122 61.5
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 3.6e-23 112.1 142 48.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-19 100.5 81 65.4
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.2e-18 97.1 99 49.5
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.1e-18 96.3 152 42.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.3e-17 92.8 148 43.2
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 2.3e-17 92.8 195 37.4
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.1e-16 90.5 139 39.6
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 4.3e-16 88.6 153 45.1
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 4.3e-16 88.6 117 42.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 9.5e-16 87.4 118 45.8
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.2e-15 84.7 48 79.2
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.1e-14 84.0 141 42.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.1e-14 84.0 143 39.9
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 3.1e-14 82.4 85 51.8
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.0e-14 82.0 48 77.1
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.6e-10 68.6 45 75.6


User provided reference genes

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