Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1993.8 1020 100.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1508.8 1066 74.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1035 74.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1481.8 1028 74.9
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1458.7 1028 73.3
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1451.4 1028 73.5
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1438.3 1038 71.3
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1437.9 1021 72.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 1028 72.8
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1027 71.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1417.5 1045 70.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 1020 71.3
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1035 70.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1411.0 1025 70.8
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1407.5 1040 71.7
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1025 70.8
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1028 70.9
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1006 71.3
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1401.0 1028 70.7
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1040 69.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1028 70.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1024 70.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1389.8 1003 70.8
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1082 67.8
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1016 70.3
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1382.9 1031 69.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1020 70.0
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1030 70.1
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1377.8 1004 70.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1024 69.7
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1023 69.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1374.8 1004 70.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1036 68.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1024 70.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1004 70.5
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1047 68.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1028 70.2
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1027 69.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1365.5 1027 68.9
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1028 68.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1010 69.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1359.4 1052 66.9
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1357.4 1021 68.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1036 68.2
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1355.5 1032 67.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1355.1 1012 70.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 1032 68.4
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1349.0 1024 67.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1348.6 979 71.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1027 68.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1030 68.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1030 68.3
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1345.5 1024 68.6
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1025 68.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1027 67.7
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1341.6 1042 67.1
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1024 69.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1031 68.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1027 68.5
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1024 69.0
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1038 68.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1028 68.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1334.7 1028 68.3
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1331.6 1037 68.2
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1028 68.2
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1020 69.0
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1328.9 1022 69.0
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 1003 69.6
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1327.8 1018 67.9
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 1034 67.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1001 68.6
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1022 68.6
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1019 69.1
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1317.8 1006 68.5
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 1007 67.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 1029 67.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1314.3 1017 68.5
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1022 66.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1013 67.8
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1046 65.9
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1311.2 1035 66.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1310.0 1027 66.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 918 72.4
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1017 67.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1035 65.9
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1302.0 1027 67.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1044 67.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 1021 66.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1018 67.1
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 984 68.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1280.4 1009 67.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 985 67.6
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 1014 66.6
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 984 68.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 985 67.3
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1271.9 1000 65.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1271.5 1009 66.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 985 67.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1266.5 985 67.1
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1008 66.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1008 66.4
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1260.4 890 73.1
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 1025 64.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1253.4 889 72.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1253.0 929 71.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 1031 65.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 1022 65.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1238.4 995 66.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1233.8 924 70.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1217.6 1022 63.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1213.7 1004 63.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1213.4 1004 64.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1213.0 1029 63.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1203.7 1014 63.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1198.0 1005 63.6
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1194.5 989 63.9
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 1020 62.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1189.9 1008 63.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1189.5 1002 63.4
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1177.2 1023 61.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 1016 61.9
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 1004 61.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1005 60.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1129.4 1031 61.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1119.8 1040 60.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1099.0 1051 58.1
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.3e-310 1067.8 1025 56.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 2.0e-309 1065.8 850 65.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.1e-278 961.8 902 56.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.0e-277 959.5 992 54.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.1e-274 949.5 1046 54.3
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.6e-274 948.7 838 60.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-268 929.5 773 65.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.0e-257 892.5 992 51.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.0e-248 863.2 728 65.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.3e-244 849.7 1033 48.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.5e-240 837.0 738 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.6e-240 836.3 986 48.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.8e-240 835.1 994 48.3
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-235 820.8 993 47.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.4e-222 776.5 829 50.8
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.1e-217 761.1 820 52.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.4e-198 696.8 919 45.0
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.6e-192 676.8 719 58.0
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.2e-189 667.9 661 56.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 8.2e-186 655.2 823 49.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 9.7e-171 605.1 631 54.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.8e-164 584.3 947 40.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.3e-153 546.2 618 51.1
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-150 538.5 667 49.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.5e-142 509.6 634 48.4
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.1e-141 506.1 1137 34.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.7e-120 437.6 380 58.4
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.9e-119 433.7 643 44.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.5e-110 404.4 544 46.7
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-102 379.0 277 71.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.4e-90 336.7 237 73.4
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.2e-85 320.1 268 64.6
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.4e-82 310.1 310 53.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.9e-74 283.9 1010 29.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 9.3e-65 253.1 245 57.1
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-50 205.3 218 48.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 6.1e-48 197.2 942 23.1
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.9e-48 196.8 521 29.6
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.2e-45 188.7 174 52.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-42 179.1 235 44.3
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.1e-40 172.2 148 58.8
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.8e-39 169.1 148 58.1
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.9e-35 154.1 137 56.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.5e-30 139.4 237 41.8
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.4e-28 132.9 128 54.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.2e-22 113.2 112 53.6
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.7e-21 108.2 89 56.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.3e-21 107.1 88 56.8
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.6e-16 92.8 56 78.6
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 80 62.5
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.3e-09 68.2 68 48.5


User provided reference genes

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