Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 3.3e-135 485.0 233 100.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.8e-57 226.1 216 56.9
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-36 157.5 220 45.0
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 3.7e-33 146.0 241 39.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-32 144.4 217 43.8
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.8e-32 143.7 223 43.0
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.3e-32 142.1 218 44.0
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.0e-30 137.9 216 38.0
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.0e-30 137.9 215 43.3
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-29 134.4 219 39.3
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.9e-29 133.7 209 41.6
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 3.2e-29 132.9 203 43.3
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 9.4e-29 131.3 212 41.0
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.2e-28 131.0 209 41.1
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.4e-27 127.5 219 39.3
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.8e-27 127.1 207 38.6
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 5.1e-27 125.6 199 39.7
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.1e-27 125.6 224 38.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.6e-26 123.2 199 38.7
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 4.4e-26 122.5 200 41.5
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 4.4e-26 122.5 213 39.4
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.7e-26 122.1 199 38.2
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 7.4e-26 121.7 213 36.6
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.8e-25 119.0 234 37.2
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.4e-24 117.5 210 39.5
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.4e-24 117.5 240 38.8
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.4e-24 117.5 240 38.8
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.8e-24 117.1 215 40.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.8e-24 117.1 202 39.1
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.8e-24 117.1 211 37.4
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 1.8e-24 117.1 203 39.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.3e-24 115.5 224 39.3
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 6.9e-24 115.2 192 37.5
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.2e-23 114.4 114 50.9
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.2e-23 114.4 230 34.8
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.5e-23 114.0 219 34.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.0e-23 113.6 215 39.5
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 2.0e-23 113.6 210 36.7
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.6e-23 113.2 193 38.9
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.4e-23 112.8 231 38.1
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 3.4e-23 112.8 218 35.8
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.4e-23 112.8 213 37.6
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.9e-23 112.1 218 38.1
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.0e-22 111.3 210 38.1
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.7e-22 110.5 221 36.2
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.2e-22 110.2 213 37.1
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 2.2e-22 110.2 167 38.3
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 2.9e-22 109.8 231 34.6
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.9e-22 109.8 219 38.8
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 2.9e-22 109.8 211 36.5
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.8e-22 109.4 198 37.4
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 6.5e-22 108.6 181 37.0
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 6.5e-22 108.6 191 38.7
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.1e-21 107.8 137 44.5
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.4e-21 107.5 217 38.2
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.4e-21 107.5 224 37.5
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.4e-21 107.5 202 39.6
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.9e-21 107.1 217 35.9
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-21 107.1 194 36.6
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-21 107.1 169 36.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 2.5e-21 106.7 238 37.0
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.5e-21 106.7 170 38.8
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 4.2e-21 105.9 213 37.1
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.2e-21 105.9 217 35.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 5.5e-21 105.5 229 31.9
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 5.5e-21 105.5 145 39.3
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 7.2e-21 105.1 193 37.3
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 9.4e-21 104.8 233 36.9
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.2e-20 104.4 228 36.8
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.1e-20 103.6 239 35.6
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 2.7e-20 103.2 220 35.9
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.7e-20 103.2 187 37.4
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 3.6e-20 102.8 230 36.1
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 3.6e-20 102.8 207 38.6
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 6.1e-20 102.1 221 34.8
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 6.1e-20 102.1 202 38.1
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 6.1e-20 102.1 213 34.3
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.0e-20 101.7 187 36.9
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.0e-19 101.3 201 34.8
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.4e-19 100.9 220 35.9
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.4e-19 100.9 220 35.9
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 1.4e-19 100.9 212 34.4
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.4e-19 100.9 201 34.8
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.8e-19 100.5 229 35.8
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.8e-19 100.5 196 37.2
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 2.3e-19 100.1 198 35.4
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 2.3e-19 100.1 181 40.3
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 2.3e-19 100.1 221 33.9
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 3.0e-19 99.8 207 33.3
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 5.2e-19 99.0 194 33.0
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 5.2e-19 99.0 196 35.2
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 6.7e-19 98.6 169 38.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.7e-19 98.6 169 34.9
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 6.7e-19 98.6 161 36.0
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 8.8e-19 98.2 210 35.7
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 8.8e-19 98.2 194 33.5
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 8.8e-19 98.2 221 33.9
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 2.6e-18 96.7 221 29.9
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.3e-18 96.3 211 34.1
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.3e-18 96.3 211 34.1
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.3e-18 96.3 232 34.1
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.3e-17 94.4 211 37.9
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.7e-17 94.0 203 33.0
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.7e-17 94.0 199 34.7
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 2.2e-17 93.6 204 33.8
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 6.3e-17 92.0 193 32.6
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.4e-16 90.9 169 33.1
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.4e-16 90.1 217 34.1
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 4.1e-16 89.4 215 33.0
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 7.0e-16 88.6 191 34.6
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 9.1e-16 88.2 219 32.9
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 9.1e-16 88.2 127 43.3
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 1.2e-15 87.8 234 32.9
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 1.2e-15 87.8 234 32.9
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 1.2e-15 87.8 213 33.3
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 1.6e-15 87.4 230 33.5
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-15 87.4 172 36.0
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.6e-15 86.7 167 35.9
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 3.5e-15 86.3 225 32.9
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.5e-15 85.9 189 32.3
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 5.9e-15 85.5 213 31.5
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.7e-15 85.1 198 33.8
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 1.3e-14 84.3 102 39.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.2e-14 83.6 227 30.0
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 3.8e-14 82.8 207 34.3
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 5.0e-14 82.4 211 33.2
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 5.5e-13 79.0 217 33.6
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 1.2e-12 77.8 180 30.6
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.1e-12 77.0 191 30.4
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 2.7e-12 76.6 200 30.0
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 3.6e-12 76.3 199 30.2
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.7e-12 75.9 191 29.8
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 8.0e-12 75.1 101 45.5
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 2.3e-11 73.6 89 44.9
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 2.3e-11 73.6 197 31.0
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 3.0e-11 73.2 223 32.3
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.2e-11 72.4 189 30.2
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 6.7e-11 72.0 232 32.8
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 8.8e-11 71.6 223 30.0
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.0e-10 70.5 215 31.2
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.0e-10 70.5 193 28.5
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 2.0e-10 70.5 195 31.8
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.0e-10 70.5 99 44.4
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 2.6e-10 70.1 107 38.3
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 3.3e-10 69.7 249 27.3
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 3.3e-10 69.7 118 37.3
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 5.7e-10 68.9 180 31.7
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 9.7e-10 68.2 184 28.3
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.3e-09 67.8 144 31.2
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.2e-09 67.0 192 27.6
Os10g0389500 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.8e-09 66.6 199 30.7
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 6.3e-09 65.5 199 32.2
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.3e-09 65.5 97 38.1
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.3e-09 65.5 193 32.6
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.1e-08 64.7 171 27.5
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 1.4e-08 64.3 228 28.9
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 2.4e-08 63.5 197 32.0
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.3e-08 62.4 74 47.3
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 9.1e-08 61.6 102 34.3
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 2.7e-07 60.1 194 32.0
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 2.7e-07 60.1 107 36.4
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 4.5e-07 59.3 208 28.4
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 7.7e-07 58.5 94 37.2
AT4G33980 Arabidopsis thaliana HOM05D009953 ORTHO05D003195 1.3e-06 57.8 97 40.2
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 1.7e-06 57.4 105 36.2
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 1.7e-06 57.4 193 28.0
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 2.9e-06 56.6 194 30.9
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 3.8e-06 56.2 223 26.0
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 3.8e-06 56.2 215 29.3
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 6.5e-06 55.5 85 40.0
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 8.5e-06 55.1 163 30.7
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 8.5e-06 55.1 212 28.8


User provided reference genes

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