Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0006220 Simmondsia chinensis HOM05D001408 ORTHO05D001312 1.7e-96 355.9 174 100.0
Sc23g0004840 Simmondsia chinensis HOM05D001408 ORTHO05D001312 8.5e-59 230.7 127 89.0
EL10Ac8g18583 Beta vulgaris HOM05D001408 ORTHO05D001312 1.2e-57 226.9 127 86.6
Ah.14g080940 Amaranthus hybridus HOM05D001408 ORTHO05D001312 2.7e-57 225.7 127 86.6
PGR102G1977 Punica granatum HOM05D001408 ORTHO05D001312 1.8e-56 223.0 127 85.0
Prupe.7G237300 Prunus persica HOM05D001408 ORTHO05D001312 2.3e-56 222.6 127 85.8
COL.COLO4_15585 Corchorus olitorius HOM05D001408 ORTHO05D001312 3.9e-56 221.9 127 85.0
CANSAT56G1866 Cannabis sativa HOM05D001408 ORTHO05D001312 5.1e-56 221.5 127 84.3
Cpa.g.sc334.3 Carica papaya HOM05D001408 ORTHO05D001312 5.1e-56 221.5 127 85.0
MD02G1038000 Malus domestica HOM05D001408 ORTHO05D001312 5.1e-56 221.5 127 85.8
Atru.chr7.1245 Acer truncatum HOM05D001408 ORTHO05D001312 8.8e-56 220.7 127 85.0
AUR62011065 Chenopodium quinoa HOM05D001408 ORTHO05D001312 1.1e-55 220.3 127 85.8
AUR62033442 Chenopodium quinoa HOM05D001408 ORTHO05D001312 1.1e-55 220.3 127 85.8
Duzib150G0560 Durio zibethinus HOM05D001408 ORTHO05D001312 1.5e-55 219.9 127 84.3
Eucgr.C04161 Eucalyptus grandis HOM05D001408 ORTHO05D001312 1.5e-55 219.9 127 84.3
RcHm_v2.0_Chr2g0089431 Rosa chinensis HOM05D001408 ORTHO05D001312 1.5e-55 219.9 127 84.3
Thecc.09G119900 Theobroma cacao HOM05D001408 ORTHO05D001312 1.5e-55 219.9 127 84.3
FvH4_1g03950 Fragaria vesca HOM05D001408 ORTHO05D001312 2.0e-55 219.5 127 83.5
FAN19G2584 Fragaria x ananassa HOM05D001408 ORTHO05D001312 2.0e-55 219.5 127 83.5
MD15G1178300 Malus domestica HOM05D001408 ORTHO05D001312 2.0e-55 219.5 127 84.3
QL02p087153 Quercus lobata HOM05D001408 ORTHO05D001312 2.0e-55 219.5 127 85.0
VMungo1215G1412 Vigna mungo HOM05D001408 ORTHO05D001312 2.0e-55 219.5 127 83.5
Cfa003326 Carpinus fangiana HOM05D001408 ORTHO05D001312 2.6e-55 219.2 127 84.3
CiPaw.03G239100 Carya illinoinensis HOM05D001408 ORTHO05D001312 2.6e-55 219.2 127 85.0
Ca_21710_v3 Cicer arietinum L. HOM05D001408 ORTHO05D001312 3.3e-55 218.8 127 84.3
Hund09161 Selenicereus undatus HOM05D001408 ORTHO05D001312 3.3e-55 218.8 127 83.5
Ciclev10008976m.g Citrus clementina HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 82.7
FAN23G2869 Fragaria x ananassa HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 84.3
Glyma.05G010700 Glycine max HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 82.7
Glyma.17G118400 Glycine max HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 82.7
Gohir.D13G203900 Gossypium hirsutum HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 84.3
Gorai.013G232700 Gossypium raimondii HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 84.3
Manes.14G128500 Manihot esculenta HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 83.5
TPR.G9085 Trifolium pratense HOM05D001408 ORTHO05D001312 4.4e-55 218.4 127 84.3
Actinidia26415 Actinidia chinensis HOM05D001408 ORTHO05D001312 5.7e-55 218.0 127 83.5
Gohir.A13G198500 Gossypium hirsutum HOM05D001408 ORTHO05D001312 5.7e-55 218.0 127 83.5
Phvul.003G160700 Phaseolus vulgaris HOM05D001408 ORTHO05D001312 5.7e-55 218.0 127 82.7
FAN26G1158 Fragaria x ananassa HOM05D001408 ORTHO05D001312 7.4e-55 217.6 127 83.5
Manes.06G050600 Manihot esculenta HOM05D001408 ORTHO05D001312 7.4e-55 217.6 127 82.7
Medtr4g113520 Medicago truncatula HOM05D001408 ORTHO05D001312 7.4e-55 217.6 127 83.5
Potri.018G073400 Populus trichocarpa HOM05D001408 ORTHO05D001312 7.4e-55 217.6 127 81.9
TWI32G1093 Tripterygium wilfordii HOM05D001408 ORTHO05D001312 7.4e-55 217.6 127 83.5
arahy.Tifrunner.gnm1.ann1.LM66CL Arachis hypogaea HOM05D001408 ORTHO05D001312 9.7e-55 217.2 127 82.7
arahy.Tifrunner.gnm1.ann1.QNR6CS Arachis hypogaea HOM05D001408 ORTHO05D001312 9.7e-55 217.2 127 82.7
CSS0030195 Camellia sinensis var. sinensis HOM05D001408 ORTHO05D001312 9.7e-55 217.2 127 81.9
Haze_25636 Corylus avellana HOM05D001408 ORTHO05D001312 9.7e-55 217.2 127 83.5
MELO3C026628.2 Cucumis melo HOM05D001408 ORTHO05D001312 9.7e-55 217.2 126 84.1
Potri.006G154800 Populus trichocarpa HOM05D001408 ORTHO05D001312 9.7e-55 217.2 127 81.1
Sp1g09710 Schrenkiella parvula HOM05D001408 ORTHO05D001312 1.3e-54 216.9 127 84.3
Thhalv10008262m.g Eutrema salsugineum HOM05D001408 ORTHO05D001312 1.7e-54 216.5 127 83.5
Lj4g0017489 Lotus japonicus HOM05D001408 ORTHO05D001312 2.2e-54 216.1 127 81.9
Cc06_g09030 Coffea canephora HOM05D001408 ORTHO05D001312 2.8e-54 215.7 127 82.7
MBI01_g34146_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 2.8e-54 215.7 127 81.9
Aa31LG1G3880 Aethionema arabicum HOM05D001408 ORTHO05D001312 3.7e-54 215.3 127 81.9
C08p48380 Brassica napus HOM05D001408 ORTHO05D001312 3.7e-54 215.3 127 82.7
BraA09t41814Z Brassica rapa HOM05D001408 ORTHO05D001312 3.7e-54 215.3 127 82.7
Dinv36576 Davidia involucrata HOM05D001408 ORTHO05D001312 3.7e-54 215.3 127 81.9
THA.LOC104809010 Tarenaya hassleriana HOM05D001408 ORTHO05D001312 6.3e-54 214.5 127 82.7
BcaC07g38634 Brassica carinata HOM05D001408 ORTHO05D001312 8.2e-54 214.2 127 82.7
A08p33700 Brassica napus HOM05D001408 ORTHO05D001312 8.2e-54 214.2 127 82.7
A09p64810 Brassica napus HOM05D001408 ORTHO05D001312 8.2e-54 214.2 127 81.9
Lalb_Chr13g0302121 Lupinus albus HOM05D001408 ORTHO05D001312 8.2e-54 214.2 127 81.9
CARHR011220 Cardamine hirsuta HOM05D001408 ORTHO05D001312 1.1e-53 213.8 127 81.9
Duzib187G1226 Durio zibethinus HOM05D001408 ORTHO05D001312 1.1e-53 213.8 127 81.9
Duzib187G1453 Durio zibethinus HOM05D001408 ORTHO05D001312 1.1e-53 213.8 127 81.9
MBI04_g00946_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 1.1e-53 213.8 126 82.5
Nn2g11918 Nelumbo nucifera HOM05D001408 ORTHO05D001312 1.8e-53 213.0 127 81.1
AL1G22000 Arabidopsis lyrata HOM05D001408 ORTHO05D001312 2.4e-53 212.6 127 81.1
Hma1.2p1_0018F.1_g012880 Hydrangea macrophylla HOM05D001408 ORTHO05D001312 2.4e-53 212.6 127 80.3
Nn8g39351 Nelumbo nucifera HOM05D001408 ORTHO05D001312 2.4e-53 212.6 127 79.5
AT1G11020 Arabidopsis thaliana HOM05D001408 ORTHO05D001312 3.1e-53 212.2 127 80.3
CDE06G2192 Ceratophyllum demersum HOM05D001408 ORTHO05D001312 3.1e-53 212.2 127 81.1
Carub.0001s1059 Capsella rubella HOM05D001408 ORTHO05D001312 4.1e-53 211.8 127 80.3
Lsat_1_v5_gn_5_97600 Lactuca sativa HOM05D001408 ORTHO05D001312 6.9e-53 211.1 126 82.5
HanXRQChr10g0316721 Helianthus annuus HOM05D001408 ORTHO05D001312 9.1e-53 210.7 126 81.7
Sabra06G0122700 Salix brachista HOM05D001408 ORTHO05D001312 2.0e-52 209.5 127 78.7
TAR625G0724 Trochodendron aralioides HOM05D001408 ORTHO05D001312 2.0e-52 209.5 127 80.3
ECA234G4639 Erigeron canadensis HOM05D001408 ORTHO05D001312 2.6e-52 209.1 126 81.0
ClCG06G010750 Citrullus lanatus HOM05D001408 ORTHO05D001312 4.5e-52 208.4 127 79.5
CsaV3_1G029630 Cucumis sativus L. HOM05D001408 ORTHO05D001312 4.5e-52 208.4 127 79.5
Lj7C636T1 Lonicera japonica HOM05D001408 ORTHO05D001312 5.9e-52 208.0 137 76.6
TAR636G0529 Trochodendron aralioides HOM05D001408 ORTHO05D001312 5.9e-52 208.0 127 78.7
Gohir.A05G019300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.0e-51 207.2 127 78.0
Gorai.009G020600 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.0e-51 207.2 127 78.0
Rhsim01G0087200 Rhododendron simsii HOM05D001408 ORTHO05D001312 1.0e-51 207.2 127 80.3
Rhsim01G0087500 Rhododendron simsii HOM05D001408 ORTHO05D001312 1.0e-51 207.2 127 80.3
Sed0024294 Sechium edule HOM05D001408 ORTHO05D001312 1.7e-51 206.5 127 78.0
Zm00001eb055230 Zea mays HOM05D001408 ORTHO05D001312 1.7e-51 206.5 128 77.3
Oeu053756.2 Olea europaea HOM05D001408 ORTHO05D001312 2.2e-51 206.1 127 78.0
Os08g0384900 Oryza sativa ssp. japonica HOM05D001408 ORTHO05D001312 2.2e-51 206.1 128 76.6
TAR626G1435 Trochodendron aralioides HOM05D001408 ORTHO05D001312 2.9e-51 205.7 127 76.4
PSO170G5111 Papaver somniferum HOM05D001408 ORTHO05D001312 3.8e-51 205.3 127 77.2
PSO242G0003 Papaver somniferum HOM05D001408 ORTHO05D001312 3.8e-51 205.3 127 77.2
BraA08t35286Z Brassica rapa HOM05D001408 ORTHO05D001312 5.0e-51 204.9 140 75.0
DCAR_017846 Daucus carota HOM05D001408 ORTHO05D001312 1.4e-50 203.4 127 78.0
Sabra18G0062200 Salix brachista HOM05D001408 ORTHO05D001312 3.2e-50 202.2 146 69.9
SEGI_31838 Sequoiadendron giganteum HOM05D001408 ORTHO05D001312 7.2e-50 201.1 127 76.4
vmacro06185 Vaccinium macrocarpon HOM05D001408 ORTHO05D001823 7.2e-50 201.1 127 78.0
ATR0716G078 Amborella trichopoda HOM05D001408 ORTHO05D001312 1.6e-49 199.9 126 77.0
Peaxi162Scf00361g00079 Petunia axillaris HOM05D001408 ORTHO05D001312 1.6e-49 199.9 127 76.4
C08p14070 Brassica napus HOM05D001408 ORTHO05D001312 2.3e-48 196.1 134 75.4
BolC8t49045H Brassica oleracea HOM05D001408 ORTHO05D001312 2.3e-48 196.1 134 75.4
Os01g0610700 Oryza sativa ssp. japonica HOM05D001408 ORTHO05D001312 3.3e-47 192.2 127 73.2
GSVIVG01015477001 Vitis vinifera HOM05D001408 ORTHO05D001312 3.3e-47 192.2 186 58.1
Actinidia40441 Actinidia chinensis HOM05D001408 ORTHO05D001312 4.4e-47 191.8 120 79.2
HPP92_024083 Vanilla planifolia HOM05D001408 ORTHO05D001312 1.4e-45 186.8 127 72.4
Lsat_1_v5_gn_8_58101 Lactuca sativa HOM05D001408 ORTHO05D001312 7.0e-45 184.5 136 69.1
Hund26463 Selenicereus undatus HOM05D001408 ORTHO05D001312 2.0e-44 183.0 128 71.9
Mapoly0061s0128 Marchantia polymorpha HOM05D001408 ORTHO05D001312 4.5e-44 181.8 127 68.5
Gohir.D05G020400 Gossypium hirsutum HOM05D001408 ORTHO05D001312 7.7e-44 181.0 109 79.8
MBI01_g44858_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 1.3e-43 180.3 128 72.7
Zm00001eb161850 Zea mays HOM05D001408 ORTHO05D001312 8.5e-43 177.6 127 67.7
FAN28G0235 Fragaria x ananassa HOM05D001408 ORTHO05D001312 1.6e-41 173.3 125 67.2
AagrBONN_evm.TU.Sc2ySwM_368.2373 Anthoceros agrestis HOM05D001408 ORTHO05D001312 3.6e-41 172.2 128 65.6
HanXRQChr06g0179911 Helianthus annuus HOM05D001408 ORTHO05D001312 2.8e-38 162.5 127 63.0
Aqoxy7G02017 Aquilegia oxysepala HOM05D001408 ORTHO05D001312 2.9e-35 152.5 128 62.5
HanXRQChr07g0197361 Helianthus annuus HOM05D001408 ORTHO05D001312 1.9e-34 149.8 113 69.0
SMO147G0383 Selaginella moellendorffii HOM05D001408 ORTHO05D001312 1.7e-30 136.7 129 57.4
Nitab4.5_0000010g0070 Nicotiana tabacum HOM05D001408 ORTHO05D001312 3.1e-29 132.5 90 75.6
DCAR_014856 Daucus carota HOM05D000070 ORTHO05D003491 1.0e-27 127.5 88 69.3
ECA234G2636 Erigeron canadensis HOM05D001408 ORTHO05D001312 4.2e-26 122.1 125 55.2
Nitab4.5_0009562g0020 Nicotiana tabacum HOM05D001408 ORTHO05D001312 1.2e-23 114.0 70 81.4
FAN03G2334 Fragaria x ananassa HOM05D001513 ORTHO05D001494 3.4e-15 85.9 55 76.4
Ah.09g226490 Amaranthus hybridus HOM05D001408 ORTHO05D001312 4.3e-10 68.9 30 93.3
Psat0s3462g0120 Pisum sativum HOM05D001408 ORTHO05D001312 9.5e-10 67.8 31 87.1
DCAR_025283 Daucus carota HOM05D001408 ORTHO05D001312 1.6e-09 67.0 120 36.7
BolC8t52377H Brassica oleracea HOM05D001408 ORTHO05D001312 3.6e-09 65.9 31 83.9
FvH4_6g51470 Fragaria vesca HOM05D001408 ORTHO05D001312 8.0e-09 64.7 33 78.8
FAN06G4179 Fragaria x ananassa HOM05D001408 ORTHO05D001312 5.2e-08 62.0 95 44.2
Sc18g0000870 Simmondsia chinensis HOM05D001408 ORTHO05D001312 1.2e-07 60.8 33 78.8
TWI74G1078 Tripterygium wilfordii HOM05D001408 ORTHO05D001312 1.5e-07 60.5 127 35.4
Phvul.002G263200 Phaseolus vulgaris HOM05D001408 ORTHO05D001312 2.6e-07 59.7 161 32.3
CDE05G3356 Ceratophyllum demersum HOM05D001408 ORTHO05D001312 3.4e-07 59.3 140 33.6
CDE05G0015 Ceratophyllum demersum HOM05D001408 ORTHO05D001312 1.3e-06 57.4 140 32.1
Hund13652 Selenicereus undatus HOM05D001408 ORTHO05D001312 1.3e-06 57.4 151 31.1
PSO675G1259 Papaver somniferum HOM05D001408 ORTHO05D001312 1.7e-06 57.0 142 33.1
MSTRG.2544 Avicennia marina HOM05D001408 ORTHO05D001312 2.2e-06 56.6 141 31.9
THA.LOC104804151 Tarenaya hassleriana HOM05D001408 ORTHO05D001312 2.2e-06 56.6 160 30.6
Manes.13G088500 Manihot esculenta HOM05D001408 ORTHO05D001312 2.9e-06 56.2 157 28.7
TPR.G21053 Trifolium pratense HOM05D001408 ORTHO05D001312 2.9e-06 56.2 152 32.9
AL4G11430 Arabidopsis lyrata HOM05D001408 ORTHO05D001312 3.7e-06 55.8 160 32.5
AT2G22120 Arabidopsis thaliana HOM05D001408 ORTHO05D001312 3.7e-06 55.8 160 32.5
BolC4t26705H Brassica oleracea HOM05D001408 ORTHO05D001312 3.7e-06 55.8 160 32.5
Eucgr.I00344 Eucalyptus grandis HOM05D001408 ORTHO05D001312 3.7e-06 55.8 157 31.2
Sabra05G0066700 Salix brachista HOM05D001408 ORTHO05D001312 3.7e-06 55.8 140 31.4
Migut.L00090 Erythranthe guttata HOM05D001408 ORTHO05D001312 4.9e-06 55.5 138 33.3
Thhalv10000252m.g Eutrema salsugineum HOM05D001408 ORTHO05D001312 4.9e-06 55.5 160 32.5
Lalb_Chr11g0075211 Lupinus albus HOM05D001408 ORTHO05D001312 4.9e-06 55.5 159 30.8
CiPaw.03G137200 Carya illinoinensis HOM05D001408 ORTHO05D001312 6.4e-06 55.1 170 31.8
COL.COLO4_11042 Corchorus olitorius HOM05D001408 ORTHO05D001312 6.4e-06 55.1 81 40.7
Lj4A879G63 Lonicera japonica HOM05D001408 ORTHO05D001312 6.4e-06 55.1 140 30.7
Psat5g087840 Pisum sativum HOM05D001408 ORTHO05D001312 6.4e-06 55.1 159 30.8
Rhsim10G0154900 Rhododendron simsii HOM05D001408 ORTHO05D001312 6.4e-06 55.1 150 31.3
Sp4g01140 Schrenkiella parvula HOM05D001408 ORTHO05D001312 6.4e-06 55.1 160 31.9
Sc07g0000570 Simmondsia chinensis HOM05D001408 ORTHO05D001312 6.4e-06 55.1 158 30.4
Solyc04g054330.3 Solanum lycopersicum HOM05D001408 ORTHO05D001312 6.4e-06 55.1 164 31.7
Sopen04g023940 Solanum pennellii HOM05D001408 ORTHO05D001312 6.4e-06 55.1 164 31.7
arahy.Tifrunner.gnm1.ann1.8BB7J7 Arachis hypogaea HOM05D001408 ORTHO05D001312 8.3e-06 54.7 151 32.5
arahy.Tifrunner.gnm1.ann1.N0D15P Arachis hypogaea HOM05D001408 ORTHO05D001312 8.3e-06 54.7 151 32.5
MSTRG.15738 Avicennia marina HOM05D001408 ORTHO05D001312 8.3e-06 54.7 138 31.9
A04p16620 Brassica napus HOM05D001408 ORTHO05D001312 8.3e-06 54.7 160 32.5
C04p51120 Brassica napus HOM05D001408 ORTHO05D001312 8.3e-06 54.7 160 32.5
BraA04t17296Z Brassica rapa HOM05D001408 ORTHO05D001312 8.3e-06 54.7 160 32.5
Carub.0004s0125 Capsella rubella HOM05D001408 ORTHO05D001312 8.3e-06 54.7 160 32.5
Lsat_1_v5_gn_2_67680 Lactuca sativa HOM05D001408 ORTHO05D001312 8.3e-06 54.7 148 31.1
Oeu002191.1 Olea europaea HOM05D001408 ORTHO05D001312 8.3e-06 54.7 71 43.7
Sed0021419 Sechium edule HOM05D001408 ORTHO05D001312 8.3e-06 54.7 140 32.9
TWI77G0258 Tripterygium wilfordii HOM05D001408 ORTHO05D001312 8.3e-06 54.7 160 31.9


User provided reference genes

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