Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 7.4e-206 720.3 364 100.0
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 5.2e-127 458.4 321 68.5
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.6e-126 456.1 325 71.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.8e-126 454.9 321 70.1
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.8e-126 454.9 321 70.1
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.6e-123 445.3 321 69.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 7.8e-123 444.5 321 69.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.0e-122 444.1 321 67.3
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 6.6e-122 441.4 320 67.2
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.5e-121 439.5 320 67.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 3.3e-121 439.1 326 66.9
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 7.3e-121 438.0 321 67.3
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 9.5e-121 437.6 322 68.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.2e-120 437.2 321 67.0
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.1e-119 434.1 321 67.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.1e-119 434.1 321 67.0
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.4e-119 433.7 325 66.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.8e-119 433.3 320 66.6
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.0e-119 432.2 334 63.2
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 4.0e-119 432.2 323 65.9
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 6.8e-119 431.4 323 65.0
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 6.8e-119 431.4 321 67.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.2e-118 430.6 319 66.1
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.5e-118 430.3 322 66.1
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 2.6e-118 429.5 320 64.7
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.6e-118 429.5 320 65.9
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.4e-118 429.1 323 65.3
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.4e-118 429.1 320 65.0
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 3.4e-118 429.1 322 65.2
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 5.8e-118 428.3 321 65.4
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 9.9e-118 427.6 325 65.2
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 2.2e-117 426.4 321 67.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 6.4e-117 424.9 320 63.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 6.4e-117 424.9 322 65.2
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 8.4e-117 424.5 323 65.9
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.4e-116 423.7 321 64.5
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.4e-116 422.9 325 65.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.2e-116 422.5 321 64.5
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.2e-116 422.5 321 63.6
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.2e-116 422.5 321 64.8
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 7.1e-116 421.4 321 64.8
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 9.2e-116 421.0 323 65.6
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 9.2e-116 421.0 323 64.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.2e-115 420.6 321 63.9
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.6e-115 420.2 323 65.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-115 420.2 320 63.4
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-115 420.2 320 63.8
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.7e-115 419.5 321 64.8
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 6.0e-115 418.3 323 63.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.0e-114 417.5 320 63.4
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-114 416.8 323 63.8
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-114 416.8 323 63.8
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-114 416.8 323 63.8
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.3e-114 416.4 321 63.6
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.3e-114 416.4 325 64.0
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 3.0e-114 416.0 325 64.3
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 3.0e-114 416.0 323 63.5
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 3.9e-114 415.6 325 63.4
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 3.9e-114 415.6 325 64.6
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.9e-114 415.6 325 64.3
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 6.6e-114 414.8 325 63.4
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.6e-114 414.8 323 63.5
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 6.6e-114 414.8 322 64.0
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 6.6e-114 414.8 321 64.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 8.7e-114 414.5 321 62.6
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 8.7e-114 414.5 361 59.3
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-113 414.1 323 63.5
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-113 413.3 325 63.1
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 3.3e-113 412.5 325 63.1
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 9.6e-113 411.0 325 63.1
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 9.6e-113 411.0 325 63.1
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 9.6e-113 411.0 323 62.5
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.6e-112 410.2 325 63.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-112 409.8 324 63.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 2.1e-112 409.8 320 62.5
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 6.2e-112 408.3 324 63.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-111 406.8 325 62.5
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.8e-111 406.8 324 63.0
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.8e-111 406.8 323 61.9
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 4.0e-111 405.6 321 62.6
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 6.9e-111 404.8 324 61.7
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 9.0e-111 404.4 328 61.9
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-110 404.1 324 62.0
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-110 404.1 324 62.0
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 9.9e-110 401.0 324 62.0
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.2e-109 399.8 324 61.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 8.4e-109 397.9 335 59.7
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 8.4e-109 397.9 335 59.7
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 3.2e-108 396.0 325 60.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 4.2e-108 395.6 321 61.1
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 5.4e-108 395.2 322 61.2
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 9.3e-108 394.4 353 57.8
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.6e-107 393.7 322 60.9
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.7e-107 392.9 325 60.3
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 6.0e-107 391.7 325 60.9
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.3e-104 384.0 319 58.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 6.2e-104 381.7 320 59.7
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.4e-103 380.6 323 60.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 6.9e-103 378.3 325 59.4
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 6.9e-103 378.3 323 60.1
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-101 372.9 325 60.0
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 8.4e-101 371.3 254 72.4
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 4.2e-100 369.0 321 58.6
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 9.3e-100 367.9 267 64.4
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 6.7e-98 361.7 322 57.1
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.3e-96 357.5 324 55.9
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.6e-96 357.1 324 55.6
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.7e-96 355.9 322 56.5
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.0e-93 347.8 287 59.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 9.3e-92 341.3 321 55.5
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.7e-89 332.0 322 48.8
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.9e-83 311.6 331 48.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.4e-79 300.1 338 45.0
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 5.7e-65 252.3 321 39.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.3e-64 251.1 165 74.5
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.0e-62 243.8 254 51.2
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 6.7e-58 228.8 229 51.5
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 7.4e-57 225.3 167 64.7
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-56 224.6 167 64.7
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 2.6e-49 200.3 321 36.8
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 9.8e-49 198.4 152 63.2
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.7e-48 197.6 135 72.6
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 8.3e-48 195.3 163 59.5
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 4.2e-44 183.0 329 34.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-42 177.9 132 65.9
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-36 158.3 111 70.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.2e-36 155.6 100 73.0
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 2.8e-35 153.7 159 51.6
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-35 153.7 102 69.6
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 2.3e-34 150.6 98 71.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 3.0e-34 150.2 98 71.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 9.8e-33 145.2 101 69.3
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.3e-32 144.8 184 45.1
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.3e-32 144.8 107 59.8
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.8e-31 141.0 99 68.7
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 7.0e-31 139.0 171 45.0
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 9.2e-31 138.7 98 64.3
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.0e-30 137.5 166 40.4
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 7.8e-30 135.6 263 29.7
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-27 127.1 83 72.3
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-27 127.1 83 72.3
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 4.9e-24 116.3 186 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.4e-23 114.8 157 40.1
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.0e-18 96.7 142 43.7
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 8.3e-16 89.0 122 43.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.1e-15 88.6 119 46.2
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-15 88.2 109 45.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 9.5e-12 75.5 43 81.4
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 4.7e-11 73.2 127 41.7
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.5e-09 68.2 101 39.6
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.6e-09 67.4 39 76.9
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 7.6e-09 65.9 61 55.7
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 7.6e-09 65.9 279 23.7
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 8.4e-08 62.4 253 22.1
AT1G24130 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 3.2e-07 60.5 235 26.0
Psat5g182520 Pisum sativum HOM05D001610 ORTHO05D001585 9.2e-07 58.9 277 21.3
Glyma.08G304300 Glycine max HOM05D001610 ORTHO05D001585 1.2e-06 58.5 273 22.0
Oeu033548.3 Olea europaea HOM05D001610 ORTHO05D001585 1.2e-06 58.5 213 22.5
TPR.G14758 Trifolium pratense HOM05D001610 ORTHO05D001585 1.2e-06 58.5 277 21.3
Ca_13921_v3 Cicer arietinum L. HOM05D001610 ORTHO05D001585 1.6e-06 58.2 279 20.8
Medtr3g449990 Medicago truncatula HOM05D001610 ORTHO05D001585 1.6e-06 58.2 280 20.7
Medtr5g090420 Medicago truncatula HOM05D001610 ORTHO05D001585 2.1e-06 57.8 269 21.6
Aqoxy4G00048 Aquilegia oxysepala HOM05D001610 ORTHO05D001585 2.7e-06 57.4 215 20.9
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 4.6e-06 56.6 40 60.0
TPR.G8785 Trifolium pratense HOM05D001610 ORTHO05D001585 6.0e-06 56.2 273 20.9


User provided reference genes

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