Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 3.6e-60 234.6 107 100.0
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.1e-19 100.1 52 82.7
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.4e-19 99.8 70 64.3
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.1e-19 98.6 70 62.9
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 9.0e-19 97.1 49 83.7
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 9.0e-19 97.1 49 85.7
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.2e-18 96.7 49 83.7
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.0e-18 95.9 70 62.9
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-18 95.9 115 44.3
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 2.6e-18 95.5 49 81.6
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.6e-18 95.5 49 83.7
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.6e-18 95.5 72 63.9
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 3.4e-18 95.1 49 81.6
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 4.5e-18 94.7 49 79.6
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 4.5e-18 94.7 49 83.7
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 4.5e-18 94.7 49 81.6
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.3e-17 93.2 49 79.6
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-17 93.2 49 77.6
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-17 93.2 49 77.6
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.7e-17 92.8 78 56.4
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.7e-17 92.8 78 56.4
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.7e-17 92.8 78 56.4
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.7e-17 92.8 49 81.6
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.7e-17 92.8 49 81.6
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.7e-17 92.8 49 81.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.2e-17 92.4 49 81.6
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 2.9e-17 92.0 49 81.6
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.9e-17 92.0 49 79.6
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 3.8e-17 91.7 49 83.7
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 3.8e-17 91.7 49 83.7
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 4.9e-17 91.3 70 60.0
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 83.7
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 77.6
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 77.6
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 77.6
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 77.6
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 83.7
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 6.4e-17 90.9 76 56.6
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 6.4e-17 90.9 49 81.6
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 8.4e-17 90.5 49 83.7
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 8.4e-17 90.5 49 83.7
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 8.4e-17 90.5 49 81.6
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 1.1e-16 90.1 49 83.7
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.1e-16 90.1 70 57.1
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.4e-16 89.7 70 57.1
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.9e-16 89.4 49 81.6
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.9e-16 89.4 49 81.6
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.9e-16 89.4 49 79.6
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.9e-16 89.4 49 75.5
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 3.2e-16 88.6 70 57.1
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.2e-16 88.6 71 57.7
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 4.2e-16 88.2 49 79.6
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 5.5e-16 87.8 49 77.6
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 5.5e-16 87.8 49 79.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 5.5e-16 87.8 68 58.8
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 7.1e-16 87.4 49 77.6
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 79.6
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.2e-15 86.7 49 75.5
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.6e-15 86.3 79 50.6
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.6e-15 86.3 76 51.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 2.1e-15 85.9 49 73.5
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.7e-15 85.5 46 78.3
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.5e-15 85.1 49 75.5
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.5e-15 85.1 49 75.5
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.5e-15 85.1 49 75.5
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.6e-15 84.7 49 75.5
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.0e-14 83.6 68 54.4
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.0e-14 83.6 70 58.6
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.0e-14 83.6 46 76.1
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.3e-14 83.2 48 72.9
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.3e-14 83.2 70 55.7
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.3e-14 82.4 49 75.5
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 3.0e-14 82.0 101 45.5
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 3.0e-14 82.0 49 73.5
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.0e-14 82.0 50 64.0
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.1e-13 80.1 49 71.4
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 3.3e-13 78.6 103 40.8
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 3.3e-13 78.6 70 51.4
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 5.6e-13 77.8 49 69.4
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 7.4e-13 77.4 70 52.9
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 7.4e-13 77.4 88 46.6
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 8.2e-12 73.9 50 68.0
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 1.4e-11 73.2 50 68.0
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.4e-11 73.2 71 50.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 3.1e-11 72.0 98 40.8
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.2e-10 70.1 70 50.0
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.2e-10 70.1 49 67.3
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 8.4e-09 63.9 50 66.0
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 8.4e-09 63.9 50 66.0
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 7.1e-08 60.8 53 54.7
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.8e-06 56.2 50 60.0
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 3.9e-06 55.1 28 82.1


User provided reference genes

Program Settings