Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1530.4 796 100.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1127.1 746 79.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1117.8 750 76.1
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1117.4 767 75.9
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 765 75.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1105.9 768 76.7
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1100.5 713 77.7
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 764 76.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1098.2 727 75.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1097.4 732 77.3
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1096.3 773 73.4
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1094.3 758 74.9
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1094.0 758 76.5
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1094.0 714 77.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1091.3 729 76.1
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1090.5 760 74.3
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1089.7 761 73.1
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 772 74.2
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1088.6 740 74.6
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1088.2 758 74.8
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 756 74.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1085.5 777 73.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1082.8 778 72.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 738 75.1
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 768 75.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 776 72.6
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1077.8 754 73.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 729 75.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 756 74.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 757 75.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 767 71.8
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 6.5e-311 1070.5 711 77.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.4e-310 1069.3 720 76.2
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 2.4e-310 1068.5 781 71.4
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.1e-310 1067.8 730 74.2
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 4.1e-310 1067.8 792 70.3
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 5.4e-310 1067.4 788 70.7
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.1e-310 1066.6 730 74.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.6e-309 1065.8 728 74.7
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 4.6e-309 1064.3 751 72.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 5.9e-309 1063.9 762 71.8
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 6.6e-308 1060.4 763 72.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.6e-308 1060.4 759 72.1
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.6e-308 1060.4 827 67.7
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 6.6e-308 1060.4 770 72.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 8.6e-308 1060.1 752 74.1
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 3.3e-307 1058.1 756 72.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.8e-306 1055.0 751 71.6
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 3.6e-306 1054.7 759 73.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 751 72.3
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.1e-305 1051.6 726 73.1
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 4.0e-305 1051.2 764 72.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.2e-304 1049.7 748 73.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 1.2e-304 1049.7 740 72.6
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 7.5e-304 1047.0 754 74.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.2e-303 1045.4 744 75.3
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 6.4e-303 1043.9 753 74.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 750 74.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.4e-302 1042.0 694 78.1
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.7e-301 1038.5 692 75.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 6.0e-301 1037.3 725 76.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 7.8e-301 1036.9 748 74.3
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.5e-299 1031.9 751 73.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 3.3e-299 1031.6 714 74.8
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 4.3e-299 1031.2 825 67.8
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 5.6e-299 1030.8 728 72.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 7.3e-299 1030.4 756 72.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 7.3e-299 1030.4 749 73.4
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 9.5e-299 1030.0 747 73.8
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 9.5e-299 1030.0 747 73.8
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.8e-298 1028.5 749 73.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 3.6e-298 1028.1 756 72.5
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 3.1e-297 1025.0 724 74.4
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.4e-296 1021.5 770 70.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 9.8e-296 1020.0 752 73.3
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 717 73.8
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 6.0e-293 1010.7 736 71.5
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 6.6e-292 1007.3 718 72.3
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 6.6e-292 1007.3 718 72.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 6.6e-292 1007.3 753 69.9
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 8.6e-292 1006.9 713 72.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 7.3e-291 1003.8 765 69.7
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.6e-290 1002.7 714 70.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 3.6e-290 1001.5 650 78.6
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.6e-290 1001.5 744 71.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 7.6e-288 993.8 771 68.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 8.4e-287 990.3 762 67.7
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.1e-286 989.9 814 65.4
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 8.6e-284 980.3 706 72.1
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.1e-283 979.9 755 68.2
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 9.6e-283 976.9 764 67.3
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 6.2e-282 974.2 757 67.5
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.5e-280 969.5 680 73.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.3e-276 956.4 753 70.3
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 8.4e-271 937.2 725 67.0
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 8.1e-266 920.6 737 66.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.2e-232 810.4 529 75.2
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.0e-232 809.7 532 74.4
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 4.2e-230 802.0 623 72.1
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.0e-227 793.1 712 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.5e-224 782.3 729 55.3
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.9e-223 779.2 750 54.9
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 2.2e-218 763.1 720 57.9
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.5e-215 751.5 729 54.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.6e-211 739.6 534 65.7
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.8e-204 716.8 530 64.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.3e-199 699.9 531 63.8
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.9e-182 643.7 541 59.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.9e-178 629.8 414 74.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 6.2e-165 585.5 397 74.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.8e-157 559.3 414 65.0
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 7.1e-145 518.8 343 76.7
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.2e-129 466.5 263 84.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 9.1e-100 369.0 490 42.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-95 355.1 277 64.6
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.1e-92 345.5 677 35.6
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 2.9e-90 337.4 295 62.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.8e-85 320.9 607 39.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 2.0e-78 298.1 278 60.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 6.4e-69 266.5 676 31.5
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 8.6e-66 256.1 349 45.8
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.2e-38 166.0 99 75.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.2e-35 156.0 83 84.3
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-34 151.0 102 74.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 9.0e-31 139.8 145 53.8
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.4e-22 111.3 54 87.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.9e-20 105.5 132 47.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.0e-18 98.2 103 51.5
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.5e-17 95.1 122 41.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 6.3e-16 90.5 57 71.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.6e-11 74.7 75 56.0
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 3.9e-10 71.2 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.5e-09 69.3 59 59.3
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.2e-06 59.7 374 23.0


User provided reference genes

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