Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.5e-286 988.0 481 100.0
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 8.7e-239 830.1 483 83.6
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.9e-236 820.5 483 82.2
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.9e-236 820.5 483 82.2
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.5e-235 819.3 483 82.0
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 3.4e-235 818.1 483 81.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 5.9e-235 817.4 483 83.0
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 3.8e-234 814.7 483 82.0
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 1.1e-233 813.1 483 81.4
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 5.5e-233 810.8 483 82.0
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 81.4
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 6.1e-232 807.4 483 81.0
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.0e-231 806.6 482 81.7
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 2.3e-231 805.4 483 81.0
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 8.8e-231 803.5 482 80.7
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 1.1e-230 803.1 483 80.3
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 5.7e-230 800.8 482 80.7
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 7.4e-230 800.4 482 80.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 3.7e-229 798.1 483 80.3
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.1e-228 796.6 482 81.3
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 2.4e-228 795.4 484 80.8
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.1e-228 795.0 482 79.9
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 5.3e-228 794.3 485 80.4
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 9.1e-228 793.5 481 80.5
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 9.1e-228 793.5 482 80.1
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.2e-227 793.1 484 80.4
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 1.5e-227 792.7 484 79.8
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.5e-227 792.7 478 79.9
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.0e-227 792.3 483 79.5
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 2.6e-227 792.0 483 79.3
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 5.9e-227 790.8 483 79.9
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 2.2e-226 788.9 480 79.6
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 2.2e-226 788.9 483 79.9
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.9e-226 788.5 483 79.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.8e-226 788.1 482 79.0
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 8.5e-226 786.9 484 79.3
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.4e-225 786.2 484 79.5
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.5e-225 785.4 483 79.7
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.5e-225 785.4 483 79.5
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 1.6e-224 782.7 483 79.3
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 3.6e-224 781.6 483 79.5
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 4.7e-224 781.2 484 79.3
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.4e-223 779.6 482 79.9
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 3.0e-223 778.5 483 78.7
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 3.9e-223 778.1 489 77.5
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 6.7e-223 777.3 483 78.9
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.1e-222 776.5 485 79.0
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.3e-221 773.1 479 79.1
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 1.7e-221 772.7 486 77.0
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.8e-221 771.9 479 78.9
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 6.3e-221 770.8 484 77.9
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-220 770.0 483 78.1
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-220 770.0 485 78.6
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.4e-220 768.8 483 77.8
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 3.1e-220 768.5 483 77.8
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.1e-220 768.5 483 77.8
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 3.1e-220 768.5 482 77.2
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.1e-220 768.1 484 78.5
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 7.0e-220 767.3 479 77.5
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 9.1e-220 766.9 483 77.8
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.2e-219 766.5 481 77.8
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 1.5e-219 766.1 483 77.6
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.5e-219 766.1 483 78.5
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 2.0e-219 765.8 489 76.3
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 3.5e-219 765.0 420 86.4
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 5.9e-219 764.2 489 76.1
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 7.7e-219 763.8 481 78.2
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 7.7e-219 763.8 479 78.1
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.3e-218 763.1 480 77.3
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.7e-218 762.7 485 77.9
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.9e-218 761.9 482 78.2
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 5.0e-218 761.1 483 77.4
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.1e-217 760.0 481 78.0
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 1.4e-217 759.6 481 77.3
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.2e-217 758.4 482 76.3
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 4.2e-217 758.1 481 77.3
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 5.5e-217 757.7 514 73.3
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 7.2e-217 757.3 482 77.0
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 7.2e-217 757.3 486 76.7
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.2e-216 756.5 481 77.5
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 2.1e-216 755.7 482 76.3
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 4.7e-216 754.6 482 76.8
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 3.0e-215 751.9 480 74.8
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 5.2e-215 751.1 483 77.6
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 2.0e-214 749.2 483 76.0
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 2.0e-214 749.2 483 76.0
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.3e-213 746.5 485 75.7
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 3.7e-213 745.0 480 76.0
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 8.2e-213 743.8 483 77.0
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 1.2e-211 740.0 481 75.5
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.6e-211 739.6 480 75.6
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 5.0e-210 734.6 418 84.0
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.5e-209 733.0 396 86.9
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.5e-209 733.0 393 87.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.9e-209 732.6 396 86.9
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.6e-208 729.6 487 74.9
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.7e-208 728.8 440 80.5
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 7.5e-206 720.7 393 86.3
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 2.5e-201 705.7 448 77.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 7.5e-198 694.1 455 74.5
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 2.9e-194 682.2 419 77.6
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.6e-192 676.4 481 70.7
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 8.0e-192 674.1 417 76.0
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 6.3e-189 664.5 410 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 9.2e-188 660.6 389 77.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.5e-185 653.3 431 73.1
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.3e-178 630.2 383 78.9
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 4.0e-175 618.6 406 70.9
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.4e-172 610.1 431 71.2
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 3.9e-170 602.1 480 65.0
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 2.4e-164 582.8 378 68.8
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 2.7e-163 579.3 387 67.2
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.2e-155 553.9 289 92.0
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.3e-154 550.4 289 91.0
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.1e-147 526.6 340 75.3
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.2e-134 484.2 267 83.1
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.1e-107 393.7 237 78.1
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.7e-104 384.0 237 78.1
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 6.8e-82 308.9 171 84.2
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.6e-61 238.8 196 61.2
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.4e-58 231.5 135 81.5
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.0e-57 227.6 130 81.5
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.6e-57 227.3 136 80.1
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.4e-49 200.3 140 73.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 4.3e-44 183.3 157 59.9
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.6e-35 154.8 97 77.3
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 1.2e-30 138.7 105 64.8
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 6.7e-13 79.7 84 51.2
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.1e-10 72.4 284 25.4
Pp3c3_1820 Physcomitrium patens HOM05D000776 ORTHO05D001624 8.4e-08 62.8 180 26.1
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 1.2e-06 58.9 129 28.7
SEGI_05924 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 2.7e-06 57.8 127 29.1
Pp3c13_5280 Physcomitrium patens HOM05D000776 ORTHO05D001624 6.1e-06 56.6 157 28.0


User provided reference genes

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