Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 0.0e+00 1137.5 565 100.0
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 9.7e-80 302.0 588 36.7
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 2.4e-78 297.4 602 38.2
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.2e-72 278.5 596 34.4
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 5.0e-68 263.1 590 32.9
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 6.5e-68 262.7 597 33.3
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 9.4e-67 258.8 581 33.7
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.0e-64 251.1 570 33.3
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 8.3e-63 245.7 585 33.3
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 5.4e-62 243.0 591 33.7
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.0e-61 241.1 602 30.7
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 5.9e-61 239.6 563 34.5
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.2e-59 232.6 565 32.9
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 9.5e-59 232.3 567 31.9
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 3.6e-58 230.3 576 30.6
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.0e-57 228.8 599 32.1
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 5.2e-57 226.5 567 31.7
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 2.6e-56 224.2 573 32.6
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 1.8e-54 218.0 574 29.8
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 1.8e-54 218.0 586 31.9
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 7.0e-54 216.1 274 46.7
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 2.7e-53 214.2 586 29.5
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.3e-52 211.8 596 32.6
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 2.9e-52 210.7 624 28.4
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 2.9e-52 210.7 566 31.1
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.1e-51 208.8 432 36.1
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 2.8e-50 204.1 583 30.5
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 3.6e-50 203.8 593 29.0
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 6.1e-50 203.0 576 29.0
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 1.0e-49 202.2 461 34.1
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.4e-49 201.8 575 30.3
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 5.2e-49 199.9 596 31.0
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 8.9e-49 199.1 574 30.1
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 2.6e-48 197.6 578 28.9
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 5.8e-48 196.4 265 44.2
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 4.9e-47 193.4 602 29.4
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 6.4e-47 193.0 573 31.2
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.9e-46 191.4 172 53.5
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 7.0e-46 189.5 568 27.5
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 7.8e-45 186.0 605 29.4
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.9e-43 181.4 426 32.6
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 9.5e-43 179.1 248 40.7
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 4.7e-42 176.8 635 27.2
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 6.2e-42 176.4 583 27.8
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 8.9e-41 172.6 447 32.4
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 8.9e-41 172.6 565 30.3
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 4.4e-40 170.2 558 28.3
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 7.5e-40 169.5 573 25.8
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 3.2e-38 164.1 253 40.3
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 1.2e-37 162.2 162 48.1
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 1.6e-37 161.8 427 31.9
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 7.8e-37 159.5 172 49.4
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.0e-36 159.1 174 48.3
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 3.9e-36 157.1 172 49.4
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 5.0e-36 156.8 251 39.0
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 6.6e-36 156.4 172 48.8
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 4.3e-35 153.7 172 48.3
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 5.6e-35 153.3 249 38.6
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 7.3e-35 152.9 253 37.9
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.2e-34 152.1 263 38.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.6e-34 151.8 260 37.7
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.6e-34 151.8 608 27.3
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 4.7e-34 150.2 276 39.1
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 1.8e-33 148.3 555 27.2
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 8.9e-33 146.0 254 36.2
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 1.5e-32 145.2 234 37.6
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.0e-29 133.3 177 44.1
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 7.8e-29 132.9 227 39.6
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.0e-28 132.5 227 39.2
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.7e-28 131.7 229 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 7.1e-22 109.8 206 35.4
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.3e-20 105.5 272 27.6
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.0e-20 104.4 299 29.8
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 3.9e-20 104.0 189 32.8
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 6.4e-15 86.7 94 39.4
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 3.9e-12 77.4 53 58.5
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 1.9e-11 75.1 334 26.0
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 2.1e-10 71.6 107 37.4
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.2e-10 70.1 227 29.1
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.1e-06 59.3 199 27.6


User provided reference genes

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