Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.2e-301 1038.1 511 100.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.7e-160 570.1 514 58.9
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 1.9e-159 566.6 512 57.8
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 4.4e-156 555.4 534 53.9
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 3.0e-152 542.7 514 56.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 5.0e-152 542.0 508 53.5
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 8.6e-152 541.2 498 57.2
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.5e-151 537.7 513 54.0
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.2e-150 537.3 516 54.1
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 1.6e-150 537.0 513 54.8
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 2.1e-150 536.6 518 55.0
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 6.2e-150 535.0 518 54.8
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 1.5e-148 530.4 513 52.4
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 2.6e-148 529.6 503 56.3
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 9.8e-148 527.7 516 53.7
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.7e-147 526.9 513 53.6
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 3.7e-147 525.8 544 50.6
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.4e-146 523.9 507 52.5
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.7e-145 519.6 517 54.5
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 4.6e-145 518.8 513 53.6
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 4.6e-145 518.8 516 54.1
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 8.6e-144 514.6 508 51.6
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 3.6e-142 509.2 513 53.6
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 8.9e-141 504.6 512 51.4
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.2e-140 504.2 517 51.8
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.5e-140 503.8 515 51.3
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.5e-140 503.8 512 51.4
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 2.0e-140 503.4 514 51.8
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 2.6e-140 503.1 517 51.1
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 4.4e-140 502.3 513 51.1
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 5.8e-140 501.9 518 50.8
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 2.9e-139 499.6 495 54.3
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 6.4e-139 498.4 507 48.7
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 7.1e-138 495.0 509 51.5
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.9e-135 486.9 511 50.3
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.8e-134 483.0 495 50.9
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 3.6e-134 482.6 510 50.6
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 8.1e-134 481.5 512 50.8
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.1e-133 481.1 513 49.9
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.4e-133 480.7 512 50.4
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 2.4e-133 479.9 511 49.5
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.3e-131 474.2 515 49.9
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 3.8e-131 472.6 514 48.6
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 6.4e-131 471.9 511 49.5
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 9.3e-130 468.0 523 49.5
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 1.2e-129 467.6 516 48.6
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 3.5e-129 466.1 518 49.6
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 5.8e-124 448.7 518 45.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 5.8e-124 448.7 513 47.8
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 7.6e-124 448.4 495 48.7
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 3.8e-123 446.0 463 51.4
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 3.2e-122 443.0 513 47.8
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 1.4e-117 427.6 443 50.1
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 5.3e-117 425.6 497 46.5
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.6e-113 414.1 445 51.0
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 4.3e-111 406.0 446 49.8
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 4.0e-109 399.4 535 41.7
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 1.8e-104 384.0 415 48.0
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 7.4e-95 352.1 429 46.2
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 4.8e-94 349.4 523 39.8
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 1.1e-93 348.2 530 38.5
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 5.3e-93 345.9 392 49.5
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 9.1e-93 345.1 515 39.0
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 2.0e-92 344.0 429 43.1
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 3.4e-84 316.6 532 37.2
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 5.0e-83 312.8 513 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 3.0e-80 303.5 451 39.0
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 6.3e-78 295.8 518 38.6
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.9e-74 284.3 314 48.1
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 1.6e-73 281.2 345 44.1
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 5.3e-69 266.2 316 46.8
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 1.9e-66 257.7 243 56.0
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 9.8e-63 245.4 239 47.7
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 2.8e-54 217.2 182 56.6
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 3.7e-46 190.3 188 53.2
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 7.3e-42 176.0 588 26.2
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.4e-37 161.0 117 65.0
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 6.6e-35 152.9 208 40.9
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 6.6e-35 152.9 208 40.9
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 1.9e-34 151.4 208 40.4
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 1.4e-32 145.2 517 25.7
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 7.1e-29 132.9 106 59.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.8e-28 129.4 118 52.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.1e-24 119.0 164 39.6
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 2.0e-23 114.8 118 49.2
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 4.4e-23 113.6 91 62.6
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 1.3e-22 112.1 91 62.6
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.7e-22 111.7 90 64.4
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.1e-21 109.0 90 63.3
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 4.0e-16 90.5 66 57.6
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 1.7e-14 85.1 367 23.2
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 1.9e-13 81.6 175 28.6
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.4e-13 80.1 85 44.7
PRCOL_00002272 Prasinoderma coloniale HOM05D037949 ORTHO05D034420 1.7e-11 75.1 534 20.6
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 3.9e-11 73.9 90 44.4
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 1.3e-09 68.9 59 55.9
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 1.6e-09 68.6 222 25.2
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 4.8e-09 67.0 150 28.7
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 6.9e-08 63.2 65 52.3
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.6e-07 61.2 151 29.8


User provided reference genes

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