Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 3.0e-145 518.5 254 100.0
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 2.5e-115 419.1 261 80.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.6e-114 416.4 261 81.2
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 3.9e-113 411.8 264 78.4
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.7e-111 405.2 261 80.1
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 4.1e-110 401.7 256 78.1
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 6.9e-110 401.0 264 75.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.2e-109 400.2 264 76.9
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.0e-109 399.4 252 80.2
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.0e-109 399.4 264 75.4
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.0e-109 399.4 264 75.4
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 4.5e-109 398.3 260 76.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 7.6e-109 397.5 258 77.9
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 1.3e-108 396.7 257 77.8
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.3e-108 396.7 255 78.4
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 5.0e-108 394.8 264 76.5
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.0e-108 394.8 263 75.3
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 5.0e-108 394.8 260 77.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 6.5e-108 394.4 264 74.2
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.9e-107 392.9 263 74.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 1.9e-107 392.9 266 75.6
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.9e-107 392.9 266 75.6
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.9e-107 392.9 266 75.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.9e-107 392.9 266 75.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.5e-107 392.5 256 76.6
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.2e-107 392.1 258 76.4
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 4.2e-107 391.7 262 75.6
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.2e-107 391.7 259 74.5
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.5e-107 391.3 267 75.3
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.6e-106 389.8 262 74.8
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 2.1e-106 389.4 262 76.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.5e-106 388.7 254 76.0
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 4.6e-106 388.3 264 73.5
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 6.1e-106 387.9 258 75.2
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.0e-105 387.1 260 75.4
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.8e-105 386.3 250 75.6
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 3.9e-105 385.2 258 75.2
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 5.1e-105 384.8 255 75.7
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 6.7e-105 384.4 265 73.6
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 6.7e-105 384.4 273 73.6
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 8.7e-105 384.0 253 76.7
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.5e-104 383.3 256 76.2
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.9e-104 382.9 254 76.4
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.5e-104 382.5 254 76.4
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.5e-104 382.5 258 73.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 4.3e-104 381.7 252 75.4
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 5.7e-104 381.3 256 74.2
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 7.4e-104 380.9 256 74.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 7.4e-104 380.9 257 74.3
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 7.4e-104 380.9 255 74.1
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.6e-103 379.8 286 68.9
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.6e-103 379.8 255 74.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.6e-103 379.8 256 73.4
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.2e-103 379.4 260 75.8
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 2.8e-103 379.0 256 74.6
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 4.8e-103 378.3 276 70.7
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.1e-102 375.6 258 71.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 4.1e-102 375.2 255 73.3
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 9.0e-102 374.0 250 74.8
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 2.0e-101 372.9 260 72.7
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.9e-101 371.3 262 70.6
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 7.7e-101 370.9 256 73.8
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.2e-100 369.4 260 71.5
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 2.9e-100 369.0 249 73.1
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 3.8e-100 368.6 260 70.0
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 8.5e-100 367.5 261 72.4
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.9e-99 366.3 261 70.5
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 4.2e-99 365.2 214 82.2
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 4.6e-98 361.7 257 70.8
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 2.3e-97 359.4 207 81.6
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.0e-97 359.0 265 68.7
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 3.9e-97 358.6 281 67.3
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 3.9e-97 358.6 248 71.4
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 5.1e-97 358.2 262 69.5
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 6.7e-97 357.8 264 68.2
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 8.8e-97 357.5 256 72.3
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.5e-96 356.7 261 68.2
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 4.3e-96 355.1 262 69.1
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 5.7e-96 354.8 265 67.9
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 5.7e-96 354.8 264 68.2
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 9.7e-96 354.0 237 73.8
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.7e-95 353.2 265 68.3
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.7e-95 353.2 265 68.3
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 2.2e-95 352.8 266 67.3
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 2.2e-95 352.8 266 67.3
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 3.7e-95 352.1 262 68.3
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 8.2e-95 350.9 265 67.9
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 8.2e-95 350.9 299 60.9
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.4e-94 350.1 262 67.9
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 2.4e-94 349.4 266 66.9
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 2.4e-94 349.4 266 66.9
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.4e-94 349.4 262 67.9
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.3e-94 348.2 255 70.6
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 5.3e-94 348.2 264 67.8
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 2.0e-93 346.3 265 66.8
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 6.5e-92 341.3 287 62.0
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 8.5e-92 340.9 248 69.8
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 3.2e-91 339.0 271 65.7
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 5.5e-91 338.2 207 77.8
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.7e-90 335.9 205 77.6
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 7.9e-90 334.3 246 67.1
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 2.3e-89 332.8 262 66.4
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 3.9e-89 332.0 256 66.8
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 2.6e-88 329.3 261 65.9
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 4.8e-87 325.1 254 63.8
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 7.2e-83 311.2 205 74.6
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.1e-78 297.4 243 65.0
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 8.5e-76 287.7 250 61.2
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.9e-75 286.6 250 62.0
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.7e-74 282.7 200 71.0
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.7e-74 282.7 240 62.5
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 6.8e-73 278.1 179 79.3
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 4.4e-72 275.4 227 59.9
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-71 273.5 194 69.6
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 9.1e-70 267.7 180 72.8
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 6.5e-68 261.5 177 71.8
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.5e-64 250.4 178 69.7
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 2.6e-64 249.6 177 68.4
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.7e-60 236.9 244 47.1
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 5.0e-60 235.3 268 46.6
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 5.6e-59 231.9 206 56.8
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 7.5e-48 194.9 253 48.2
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 3.2e-46 189.5 170 54.7
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.0e-44 184.5 187 49.2
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-39 167.2 218 45.0
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.1e-34 150.2 208 38.9
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 4.6e-29 132.5 84 78.6
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 5.1e-28 129.0 275 32.4
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.8e-26 123.2 171 40.9
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.1e-25 119.8 77 79.2
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 1.2e-21 107.8 57 87.7
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.2e-21 107.8 54 94.4
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 8.1e-18 95.1 52 84.6
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.1e-06 58.2 180 27.8
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 9.3e-06 55.1 178 28.1


User provided reference genes

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