Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 2543.5 1285 100.0
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1697.2 1309 66.5
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1635.9 1293 63.6
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1629.0 1296 65.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1613.2 1297 64.5
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1583.5 1301 62.6
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1578.1 1297 63.8
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1576.2 1299 61.7
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1562.0 1260 63.9
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1558.9 1302 61.1
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1557.3 1312 62.7
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1556.2 1300 63.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1555.8 1294 62.5
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1549.3 1305 62.3
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1548.9 1296 62.7
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1547.7 1311 62.5
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1547.3 1293 61.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1545.4 1274 63.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1525.8 1326 60.9
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1524.2 1294 62.3
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1520.0 1298 61.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1517.7 1290 61.6
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1296 61.1
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1503.4 1295 61.2
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1503.4 1294 60.7
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1317 60.2
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1498.8 1296 61.0
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1498.0 1305 60.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1489.6 1299 61.3
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1487.6 1297 59.5
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1484.5 1298 61.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1483.4 1293 60.0
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1482.6 1297 59.1
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1476.5 1287 59.5
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1474.5 1303 59.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1467.6 1287 59.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1466.8 1334 58.0
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1465.7 1302 59.1
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1465.7 1296 59.0
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1464.5 1302 59.1
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1464.1 1297 59.0
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1463.7 1238 62.0
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1460.3 1293 59.2
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1456.4 1295 58.5
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1454.1 1298 59.9
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1453.0 1299 58.7
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1451.0 1295 58.1
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1450.6 1316 58.2
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1448.7 1295 58.2
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1388 56.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1444.5 1295 58.6
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1443.7 1357 56.6
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1440.2 1296 58.6
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1440.2 1298 58.3
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1434.1 1311 58.5
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1429.1 1297 58.0
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1427.5 1360 56.0
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1427.2 1421 55.9
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1425.6 1293 57.7
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1425.2 1192 62.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1413.7 1287 56.8
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1412.5 1302 56.2
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1408.3 1306 57.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1408.3 1307 57.7
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1406.3 1310 57.6
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1401.0 1293 57.5
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1377.8 1290 56.0
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1373.2 1111 64.3
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1365.5 1300 55.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1360.5 1300 55.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1355.5 1298 55.5
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1353.6 1298 55.3
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1351.3 1297 55.7
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1349.7 1298 55.1
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1348.2 1297 55.1
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1347.8 1296 55.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1346.6 1296 55.4
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1343.9 1275 56.0
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1340.1 1299 55.2
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1337.8 1091 63.0
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1336.6 1299 55.0
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1336.2 1296 53.6
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1333.5 1305 55.5
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1325.8 1113 62.6
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1322.8 1293 54.7
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1320.8 1318 53.6
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1313.1 1159 59.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1305.8 1116 61.4
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1288.5 1090 62.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1286.9 1289 54.0
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1277.3 1394 51.0
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1266.1 1216 56.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1261.5 1279 53.1
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1258.0 1327 51.9
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1250.3 1297 51.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1241.9 1291 52.1
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1241.5 1297 52.6
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1215.3 1126 59.2
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1204.9 1084 57.9
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1203.3 1165 57.2
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1186.4 1300 50.9
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1163.7 1394 48.4
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 0.0e+00 1120.1 845 67.9
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.5e-266 922.2 922 52.4
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.4e-254 884.0 1369 39.2
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.6e-253 879.8 1368 39.8
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.4e-246 857.4 648 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.8e-239 833.2 1193 40.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.5e-224 781.6 753 55.4
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.6e-202 709.5 924 46.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.7e-188 664.5 1287 34.8
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.0e-156 558.9 571 53.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 6.3e-151 539.7 657 46.3
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.8e-145 521.5 379 71.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 7.0e-142 509.6 349 74.8
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 3.8e-132 477.2 504 56.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 3.6e-114 417.5 315 62.5
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 2.2e-111 408.3 466 50.6
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.7e-98 364.0 1122 27.4
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.0e-97 360.9 222 73.9
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.5e-83 315.8 473 42.9
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 4.5e-80 304.3 1059 25.9
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.9e-80 303.1 212 70.3
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-79 302.8 425 44.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 4.9e-79 300.8 208 71.6
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.4e-78 299.3 214 70.1
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 4.9e-71 274.2 291 50.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.0e-65 254.6 163 72.4
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.7e-59 234.2 153 69.9
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.4e-59 233.8 219 53.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.2e-58 232.3 189 57.1
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 5.5e-54 217.6 982 23.4
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 5.0e-47 194.5 714 26.6
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.3e-39 169.9 167 53.9
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.0e-35 156.0 112 64.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.6e-35 155.6 382 33.2
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.7e-34 151.8 142 57.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-33 150.2 111 79.3
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.0e-32 146.0 122 57.4
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.2e-31 142.5 207 40.6
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.5e-30 139.8 153 50.3
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 3.2e-30 138.7 146 51.4
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.2e-29 136.7 92 75.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 6.7e-28 131.0 207 39.6
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.6e-27 129.0 108 75.9
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 7.5e-27 127.5 123 55.3
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 9.7e-27 127.1 179 38.5
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.5e-23 114.4 79 70.9
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 5.2e-20 104.8 83 66.3
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.8e-20 104.0 78 69.2
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 4.1e-17 95.1 229 31.9
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.0e-15 90.5 69 56.5
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 6.6e-15 87.8 62 58.1
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.4e-11 75.5 57 56.1
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 8.3e-10 70.9 66 54.5
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 2.4e-09 69.3 87 46.0
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 7.0e-09 67.8 202 30.7
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 3.5e-08 65.5 41 70.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 2.9e-07 62.4 45 66.7
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 5.0e-07 61.6 57 80.7
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-06 60.5 73 61.6


User provided reference genes

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