Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.5e-302 1040.8 512 100.0
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.7e-237 823.9 485 83.3
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.3e-226 787.7 496 77.0
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.2e-224 782.3 501 76.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.9e-221 771.5 501 76.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.9e-221 771.5 509 74.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-217 760.0 511 75.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.4e-217 758.4 516 72.7
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-216 756.9 495 74.9
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.3e-216 756.5 498 75.5
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 6.5e-216 754.2 505 73.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.4e-215 753.1 503 74.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 7.2e-215 750.7 500 75.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-214 749.6 499 73.3
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.7e-214 748.8 492 74.2
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.4e-213 746.5 494 74.3
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 3.0e-213 745.3 490 75.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.8e-213 743.8 487 75.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.5e-212 743.0 499 74.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-212 742.7 501 74.3
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.3e-212 741.5 499 74.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.4e-212 740.7 499 74.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.3e-211 740.0 491 73.9
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.7e-211 738.4 501 74.5
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.7e-211 738.4 487 75.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.3e-211 737.6 507 72.0
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.4e-210 736.5 502 72.9
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-210 736.5 503 73.8
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-210 736.5 503 71.4
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.8e-210 736.1 506 71.5
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.4e-210 735.7 516 71.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.1e-210 734.9 502 72.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 5.3e-210 734.6 488 75.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 6.9e-210 734.2 503 71.8
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 9.1e-210 733.8 516 71.3
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.2e-209 733.4 508 72.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.2e-209 733.4 498 73.5
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.5e-209 733.0 497 73.2
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-208 729.9 501 72.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.8e-208 728.4 494 74.3
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 6.5e-208 727.6 510 70.8
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.4e-207 726.5 497 72.4
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.9e-207 726.1 507 71.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.5e-207 725.7 515 71.1
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 4.2e-207 724.9 497 72.2
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 7.2e-207 724.2 497 72.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 9.4e-207 723.8 499 71.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.6e-206 721.8 507 71.0
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.6e-206 721.8 516 70.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.7e-206 721.5 509 71.3
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.4e-205 719.9 500 70.6
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.0e-205 718.8 509 71.7
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 3.9e-205 718.4 535 68.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 8.8e-205 717.2 500 71.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 7.4e-204 714.1 502 70.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 9.7e-204 713.8 499 70.9
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 9.7e-204 713.8 500 71.2
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.3e-203 713.4 494 72.9
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.7e-203 711.8 501 69.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.1e-202 707.2 507 69.8
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-201 706.8 540 67.6
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.6e-201 706.4 511 70.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 2.6e-201 705.7 504 72.0
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.1e-199 700.3 487 70.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.1e-198 696.0 498 70.1
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-198 694.5 524 67.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.2e-197 691.4 493 69.6
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.2e-197 691.4 531 66.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.3e-196 688.7 493 69.0
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.3e-195 686.8 493 69.2
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.2e-195 686.0 493 68.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 4.1e-194 681.8 571 63.4
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-193 679.9 501 69.7
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.5e-193 678.3 455 75.2
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.7e-192 676.4 486 72.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.5e-192 674.1 495 68.5
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.2e-190 670.2 494 68.4
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.7e-190 669.1 457 73.1
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.6e-190 668.7 523 65.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.7e-190 668.3 493 67.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.0e-189 665.6 503 66.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.4e-186 656.8 436 74.8
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.7e-185 652.5 500 67.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.5e-185 651.7 525 65.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.3e-184 650.2 486 67.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.3e-184 650.2 486 67.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.5e-183 646.7 451 73.8
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 8.0e-182 641.0 507 64.5
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 6.8e-181 637.9 507 63.5
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.0e-176 624.0 486 65.2
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.8e-176 622.1 509 62.1
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.4e-173 613.6 493 62.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 8.9e-173 610.9 513 61.4
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.7e-172 608.2 520 60.4
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 7.5e-172 607.8 450 68.9
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.7e-171 605.5 421 73.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.3e-171 604.4 450 68.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 5.4e-170 601.7 507 62.5
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 4.3e-167 592.0 534 56.6
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.0e-164 583.2 445 66.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.3e-163 580.5 480 62.5
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 4.9e-163 578.6 522 59.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-160 570.9 488 61.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.0e-160 570.9 490 61.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.9e-155 552.7 370 74.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-152 543.9 370 73.2
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 9.5e-151 537.7 394 70.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.6e-150 537.0 462 61.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.8e-150 536.2 475 60.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.4e-149 533.9 508 54.9
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.8e-147 525.8 363 73.0
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 4.6e-145 518.8 515 52.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 8.6e-144 514.6 320 78.8
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.6e-144 514.6 505 53.5
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-143 513.5 392 66.1
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 5.6e-143 511.9 488 55.5
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.6e-135 485.3 489 52.1
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 9.0e-133 478.0 366 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.2e-130 469.2 513 49.3
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.0e-128 464.5 279 78.5
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 8.4e-123 444.9 425 57.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.8e-117 427.2 368 63.6
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.2e-114 416.0 344 65.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 2.6e-108 396.7 521 43.2
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-106 390.2 480 48.5
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.1e-93 348.2 334 57.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 5.9e-92 342.4 372 55.4
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-88 329.3 295 58.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-82 310.8 324 53.7
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.1e-81 307.4 232 67.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.0e-71 274.2 223 61.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-69 268.1 204 62.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 9.1e-69 265.4 396 39.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.7e-68 262.3 148 80.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.3e-59 235.0 305 42.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.1e-57 226.1 131 77.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.5e-55 221.5 330 41.2
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.1e-53 213.4 127 77.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.6e-52 211.5 131 73.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 4.4e-47 193.4 212 55.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.9e-38 163.3 112 67.9
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 6.4e-38 162.9 157 53.5
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.0e-35 154.1 194 47.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-33 148.3 104 65.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-24 118.6 68 76.5
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.4e-24 117.9 336 28.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.7e-20 104.4 127 51.2
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-15 88.2 445 24.0
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.8e-14 84.0 65 64.6
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.3e-10 70.5 89 48.3
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.6e-09 68.6 72 54.2
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.8e-09 67.0 38 76.3
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.8e-09 67.0 52 53.8
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.2e-09 66.6 82 42.7
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.4e-08 64.7 46 58.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 5.8e-07 60.1 33 78.8


User provided reference genes

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