Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 3744.1 1974 100.0
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2332.4 2103 62.0
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2283.8 1987 62.7
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2274.2 2028 61.4
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2230.7 1985 61.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2207.6 2009 60.4
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2205.6 1996 61.0
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2199.9 2016 59.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2194.1 1965 61.7
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2191.0 2006 60.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2177.9 2002 59.4
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2174.1 2009 60.5
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2171.0 2144 57.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2161.3 2004 60.0
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2153.3 2001 59.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2152.5 2074 58.2
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2149.0 2001 59.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2142.5 2012 58.6
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2142.1 2001 59.1
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2129.8 1983 59.1
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2127.4 1997 59.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2114.3 2003 58.9
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 2112.4 1989 59.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2110.1 2007 58.8
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2097.8 2006 58.4
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2096.6 2004 58.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2077.0 1574 67.3
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2075.8 1546 67.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2075.4 2011 58.8
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2074.7 1906 59.4
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2062.7 1989 57.8
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2061.6 2033 57.2
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2061.2 2002 57.2
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2060.8 1542 67.6
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2057.7 2011 56.8
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2039.2 2004 57.2
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2038.1 1987 58.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2032.7 1918 60.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2032.3 1945 58.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2028.4 1960 58.0
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2027.3 1958 57.5
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2026.9 1987 56.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2024.6 1881 59.1
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2015.0 2012 55.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2013.8 1997 56.6
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2008.8 1880 58.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2007.6 1880 58.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1989.2 1995 56.5
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1979.9 2022 55.0
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1979.5 1989 56.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1974.1 1957 56.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1961.0 1987 55.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1949.5 2014 54.7
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1935.6 1865 57.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1928.3 1990 54.9
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1924.1 1963 56.0
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1921.0 2025 53.9
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1879.8 2033 52.8
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1872.1 1479 64.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1870.1 2034 52.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1869.4 2007 52.7
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1867.4 2004 53.7
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1859.7 1600 60.1
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 2009 53.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1836.2 1702 60.4
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1833.5 2002 53.3
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1829.7 1986 53.0
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1827.8 1983 54.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1827.8 2035 52.1
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1822.4 1893 53.9
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1822.4 1878 54.2
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1818.5 2134 50.7
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1869 53.8
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1803.5 1851 54.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1802.3 1867 53.3
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1800.0 1986 52.3
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1796.6 1898 53.5
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1794.2 1334 68.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1787.3 1906 52.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1780.4 2004 51.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1765.4 1958 50.4
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1748.0 1923 51.6
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1738.8 1983 49.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1712.2 1924 50.6
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1708.3 2016 48.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1704.5 1909 51.1
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1703.0 1905 50.8
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1694.9 1895 52.6
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1694.9 1895 52.6
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1692.6 1905 50.2
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1687.5 1921 50.2
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1687.2 2008 50.5
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1665.2 1999 49.2
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1634.8 1783 51.7
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1631.3 1242 67.2
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 1479 56.5
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1589.7 1900 49.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1585.1 1905 48.0
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1547.7 1889 47.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1442.6 1252 62.5
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1142.1 1670 40.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1104.0 1509 41.7
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.0e-310 1070.1 1645 38.9
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.6e-309 1065.1 1134 55.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 2.0e-305 1053.5 1978 38.0
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 7.1e-303 1045.0 2056 35.5
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.1e-298 1029.6 973 57.6
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 2.7e-286 989.9 1882 37.1
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.1e-282 978.0 893 57.9
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 4.6e-270 936.0 1147 48.3
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.8e-261 907.5 1027 55.0
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 8.8e-253 878.6 1133 49.3
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-241 839.7 1063 47.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 9.4e-239 832.0 1118 46.7
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.4e-228 796.6 1462 35.2
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 4.0e-221 773.5 1773 31.6
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.8e-193 679.5 573 61.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-187 661.8 1167 38.0
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 6.4e-179 633.3 545 62.0
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.2e-163 581.6 467 63.4
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 6.9e-149 533.5 865 41.2
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.5e-146 523.9 660 46.5
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.0e-136 493.0 556 49.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.9e-132 477.2 560 46.8
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.8e-131 474.6 560 45.4
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.0e-112 413.3 726 43.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 5.6e-98 364.4 286 66.4
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-74 286.6 462 40.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.4e-69 269.2 385 42.6
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.9e-61 243.0 249 49.4
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.3e-59 236.9 380 38.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-56 226.5 249 50.2
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-45 190.3 351 39.3
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.3e-43 183.7 471 33.3
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-43 183.3 176 52.8
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 3.7e-41 175.6 135 62.2
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.3e-38 167.2 767 29.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.7e-38 166.8 223 39.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-35 156.0 164 48.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.5e-34 152.9 1194 20.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.1e-32 145.6 163 47.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-30 139.8 164 44.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.1e-29 137.5 123 62.6
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.9e-29 136.7 80 76.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.2e-29 135.6 112 62.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.8e-27 130.2 141 51.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 9.7e-26 124.4 375 31.5
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.7e-25 122.5 1032 21.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 6.3e-25 121.7 85 74.1
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.8e-24 120.2 94 66.0
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 7.2e-21 108.2 226 35.8
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 3.0e-19 102.8 141 47.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.6e-15 89.7 56 69.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 2.9e-14 86.3 56 71.4
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.5e-13 84.0 139 38.8
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.7e-12 79.0 145 39.3
Sc25g0003360 Simmondsia chinensis HOM05D004392 ORTHO05D004846 4.7e-12 79.0 135 41.5
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 8.8e-11 74.7 70 60.0
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 2.0e-10 73.6 167 34.1
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.6e-10 73.2 71 52.1
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.8e-08 67.0 192 35.4
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 2.9e-06 59.7 151 37.7
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.9e-06 59.7 163 36.2
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 2.9e-06 59.7 59 55.9
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 8.5e-06 58.2 98 43.9


User provided reference genes

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