Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow8G2904 Salvia bowleyana HOM05D017533 ORTHO05D008866 2.4e-87 325.5 167 100.0
SalBow3G3334 Salvia bowleyana HOM05D017533 ORTHO05D362505 9.2e-79 297.0 167 93.4
SalBow5G3479 Salvia bowleyana HOM05D017533 ORTHO05D008866 3.9e-77 291.6 167 92.2
SalBow5G4096 Salvia bowleyana HOM05D017533 ORTHO05D008866 3.9e-77 291.6 167 92.2
SalBow5G5072 Salvia bowleyana HOM05D017533 ORTHO05D008866 3.9e-77 291.6 167 92.2
SalBow8G3650 Salvia bowleyana HOM05D017533 ORTHO05D008866 3.9e-77 291.6 167 92.2
SalBow8G1790 Salvia bowleyana HOM05D017533 ORTHO05D008866 1.1e-76 290.0 167 91.6
SalBow8G1593 Salvia bowleyana HOM05D000887 ORTHO05D016729 3.0e-53 212.2 107 100.0
SalBow1G7074 Salvia bowleyana HOM05D001167 ORTHO05D001054 7.4e-36 154.5 84 89.3
SalBow7G3705 Salvia bowleyana HOM05D000552 ORTHO05D000469 6.7e-21 104.8 133 53.4
Thecc.08G094400 Theobroma cacao HOM05D000552 ORTHO05D000469 6.3e-11 71.6 152 37.5
Duzib116G0006 Durio zibethinus HOM05D000552 ORTHO05D000469 1.1e-10 70.9 153 39.9
Nitab4.5_0000569g0100 Nicotiana tabacum HOM05D000552 ORTHO05D000469 1.4e-10 70.5 145 39.3
TAR628G0524 Trochodendron aralioides HOM05D000552 ORTHO05D000469 2.4e-10 69.7 133 40.6
Gorai.009G216800 Gossypium raimondii HOM05D000552 ORTHO05D000469 4.1e-10 68.9 153 37.9
Gohir.D05G210300 Gossypium hirsutum HOM05D000552 ORTHO05D000469 5.3e-10 68.6 157 36.9
Hma1.2p1_0210F.1_g089780 Hydrangea macrophylla HOM05D000552 ORTHO05D000469 9.1e-10 67.8 143 39.2
SalBow4G0967 Salvia bowleyana HOM05D007367 ORTHO05D008866 9.1e-10 67.8 36 94.4
COL.COLO4_28567 Corchorus olitorius HOM05D000552 ORTHO05D000469 1.2e-09 67.4 157 37.6
Actinidia08266 Actinidia chinensis HOM05D000552 ORTHO05D000469 1.6e-09 67.0 139 42.4
MSTRG.22237 Avicennia marina HOM05D000552 ORTHO05D000469 1.6e-09 67.0 156 35.9
Hma1.2p1_0240F.1_g100110 Hydrangea macrophylla HOM05D000552 ORTHO05D000469 1.6e-09 67.0 137 39.4
Peaxi162Scf00160g00031 Petunia axillaris HOM05D000552 ORTHO05D000469 1.6e-09 67.0 133 37.6
PGSC0003DMG400011563 Solanum tuberosum HOM05D000552 ORTHO05D000469 1.6e-09 67.0 131 39.7
AT5G43080 Arabidopsis thaliana HOM05D000552 ORTHO05D000469 2.0e-09 66.6 133 36.1
Sopen12g030470 Solanum pennellii HOM05D000552 ORTHO05D000469 2.7e-09 66.2 132 40.2
Sopen12g030490 Solanum pennellii HOM05D000552 ORTHO05D000469 3.5e-09 65.9 132 40.2
CAN.G107.45 Capsicum annuum HOM05D000552 ORTHO05D000469 5.9e-09 65.1 139 40.3
Duzib093G0760 Durio zibethinus HOM05D000552 ORTHO05D000469 5.9e-09 65.1 156 36.5
Lj4A761T91 Lonicera japonica HOM05D000552 ORTHO05D000469 7.7e-09 64.7 144 36.8
Solyc12g088520.2 Solanum lycopersicum HOM05D000552 ORTHO05D000469 7.7e-09 64.7 132 39.4
FAN20G2907 Fragaria x ananassa HOM05D000552 ORTHO05D000469 1.0e-08 64.3 143 40.6
Sopen12g030450 Solanum pennellii HOM05D000552 ORTHO05D000469 1.0e-08 64.3 132 40.2
Migut.N02756 Erythranthe guttata HOM05D000552 ORTHO05D000469 1.3e-08 63.9 153 34.6
Manes.05G179000 Manihot esculenta HOM05D000552 ORTHO05D000469 1.3e-08 63.9 144 38.2
TAR381G0034 Trochodendron aralioides HOM05D000552 ORTHO05D000469 1.3e-08 63.9 136 40.4
Dinv35912 Davidia involucrata HOM05D000552 ORTHO05D000469 1.7e-08 63.5 146 37.7
Nitab4.5_0003643g0040 Nicotiana tabacum HOM05D000552 ORTHO05D000469 1.7e-08 63.5 145 35.9
Atru.chr13.783 Acer truncatum HOM05D000552 ORTHO05D000469 2.2e-08 63.2 158 38.6
EL10As7g23822 Beta vulgaris HOM05D000552 ORTHO05D000469 2.9e-08 62.8 159 32.1
CAN.G107.43 Capsicum annuum HOM05D000552 ORTHO05D000469 2.9e-08 62.8 137 38.0
Cpa.g.sc21.135 Carica papaya HOM05D000552 ORTHO05D000469 2.9e-08 62.8 145 37.2
Solyc12g088530.2 Solanum lycopersicum HOM05D000552 ORTHO05D000469 2.9e-08 62.8 137 40.9
PGSC0003DMG400011551 Solanum tuberosum HOM05D000552 ORTHO05D000469 2.9e-08 62.8 131 38.2
MSTRG.25060 Avicennia marina HOM05D000552 ORTHO05D000469 3.8e-08 62.4 156 35.9
FvH4_2g33530 Fragaria vesca HOM05D000552 ORTHO05D000469 3.8e-08 62.4 143 39.2
MD08G1091000 Malus domestica HOM05D000552 ORTHO05D000469 3.8e-08 62.4 133 36.8
MD08G1091200 Malus domestica HOM05D000552 ORTHO05D000469 3.8e-08 62.4 137 36.5
Potri.002G121500 Populus trichocarpa HOM05D000552 ORTHO05D000469 3.8e-08 62.4 139 42.4
Solyc12g088470.3 Solanum lycopersicum HOM05D000552 ORTHO05D000469 3.8e-08 62.4 132 39.4
Sopen12g030500 Solanum pennellii HOM05D000552 ORTHO05D000469 3.8e-08 62.4 133 40.6
SGA_v2.0_scaffold214G42270 Striga asiatica HOM05D000552 ORTHO05D000469 3.8e-08 62.4 158 36.1
FAN27G0469 Fragaria x ananassa HOM05D000552 ORTHO05D000469 5.0e-08 62.0 143 39.2
Prupe.1G428100 Prunus persica HOM05D000552 ORTHO05D000469 5.0e-08 62.0 144 37.5
QL02p003104 Quercus lobata HOM05D000552 ORTHO05D000469 5.0e-08 62.0 132 38.6
SalBow6G5673 Salvia bowleyana HOM05D000552 ORTHO05D000469 5.0e-08 62.0 149 34.2
Solyc12g088500.2 Solanum lycopersicum HOM05D000552 ORTHO05D000469 5.0e-08 62.0 132 38.6
SGA_v2.0_scaffold14G06951 Striga asiatica HOM05D000552 ORTHO05D000469 5.0e-08 62.0 150 35.3
Nn5g30461 Nelumbo nucifera HOM05D000552 ORTHO05D000469 6.5e-08 61.6 137 35.0
CANSAT11G1589 Cannabis sativa HOM05D000552 ORTHO05D000469 8.5e-08 61.2 123 38.2
Nn1g04654 Nelumbo nucifera HOM05D000552 ORTHO05D000469 8.5e-08 61.2 137 38.7
Potri.014G021100 Populus trichocarpa HOM05D000552 ORTHO05D000469 8.5e-08 61.2 146 38.4
Dinv39255 Davidia involucrata HOM05D000552 ORTHO05D000469 1.1e-07 60.8 140 37.9
Sc02g0007650 Simmondsia chinensis HOM05D000552 ORTHO05D000469 1.1e-07 60.8 159 34.0
vmacro04575 Vaccinium macrocarpon HOM05D000552 ORTHO05D000469 1.1e-07 60.8 131 40.5
arahy.Tifrunner.gnm1.ann1.5L6N15 Arachis hypogaea HOM05D000552 ORTHO05D000469 1.5e-07 60.5 36 69.4
arahy.Tifrunner.gnm1.ann1.C66F89 Arachis hypogaea HOM05D000552 ORTHO05D000469 1.5e-07 60.5 36 69.4
Manes.18G043200 Manihot esculenta HOM05D000552 ORTHO05D000469 1.5e-07 60.5 143 36.4
Sopen04g031900 Solanum pennellii HOM05D000552 ORTHO05D000469 1.5e-07 60.5 149 35.6
PGSC0003DMG400021519 Solanum tuberosum HOM05D000552 ORTHO05D000469 1.5e-07 60.5 145 35.9
CARHR036750 Cardamine hirsuta HOM05D000552 ORTHO05D000469 1.9e-07 60.1 142 34.5
MELO3C010828.2 Cucumis melo HOM05D000552 ORTHO05D000469 1.9e-07 60.1 153 35.9
Rhsim06G0058100 Rhododendron simsii HOM05D000552 ORTHO05D000469 1.9e-07 60.1 141 39.0
RcHm_v2.0_Chr6g0308961 Rosa chinensis HOM05D000552 ORTHO05D000469 1.9e-07 60.1 140 35.7
Atru.chr13.784 Acer truncatum HOM05D000552 ORTHO05D000469 2.5e-07 59.7 160 36.9
BolC5t32327H Brassica oleracea HOM05D000552 ORTHO05D000469 2.5e-07 59.7 135 34.8
Psat6g014280 Pisum sativum HOM05D000552 ORTHO05D000469 2.5e-07 59.7 128 35.2
Sabra14G0014100 Salix brachista HOM05D000552 ORTHO05D000469 2.5e-07 59.7 139 39.6
GSVIVG01009399001 Vitis vinifera HOM05D000552 ORTHO05D000469 2.5e-07 59.7 142 36.6
AL8G17570 Arabidopsis lyrata HOM05D000552 ORTHO05D000469 3.2e-07 59.3 132 33.3
HanXRQChr09g0267261 Helianthus annuus HOM05D000552 ORTHO05D000469 3.2e-07 59.3 137 36.5
Lsat_1_v5_gn_1_23940 Lactuca sativa HOM05D000552 ORTHO05D000469 3.2e-07 59.3 150 40.0
MD15G1075200 Malus domestica HOM05D000552 ORTHO05D000469 3.2e-07 59.3 142 32.4
Actinidia32792 Actinidia chinensis HOM05D007367 ORTHO05D008866 4.2e-07 58.9 48 64.6
Cc10_g05280 Coffea canephora HOM05D000552 ORTHO05D000469 4.2e-07 58.9 135 39.3
HanXRQChr07g0203471 Helianthus annuus HOM05D000552 ORTHO05D000469 4.2e-07 58.9 140 40.7
QL02p003038 Quercus lobata HOM05D000552 ORTHO05D000469 4.2e-07 58.9 139 34.5
QL03p022853 Quercus lobata HOM05D000552 ORTHO05D000469 4.2e-07 58.9 139 34.5
AT1G47230 Arabidopsis thaliana HOM05D000552 ORTHO05D000469 5.5e-07 58.5 141 33.3
Oeu061840.1 Olea europaea HOM05D000552 ORTHO05D000469 5.5e-07 58.5 163 33.7
Solyc04g078310.3 Solanum lycopersicum HOM05D000552 ORTHO05D000469 5.5e-07 58.5 148 35.1
MSTRG.1049 Avicennia marina HOM05D000552 ORTHO05D000469 7.2e-07 58.2 150 36.0
Carub.0008s0564 Capsella rubella HOM05D000552 ORTHO05D000469 7.2e-07 58.2 135 31.1
Migut.C00518 Erythranthe guttata HOM05D000552 ORTHO05D000469 9.4e-07 57.8 143 37.1
BcaC05g27616 Brassica carinata HOM05D000552 ORTHO05D000469 1.2e-06 57.4 135 34.1
A05p21440 Brassica napus HOM05D000552 ORTHO05D000469 1.2e-06 57.4 135 34.1
C05p36040 Brassica napus HOM05D000552 ORTHO05D000469 1.2e-06 57.4 135 34.1
BraA05t21053Z Brassica rapa HOM05D000552 ORTHO05D000469 1.2e-06 57.4 135 34.1
DCAR_003570 Daucus carota HOM05D000552 ORTHO05D000469 1.2e-06 57.4 67 44.8
HanXRQChr04g0103051 Helianthus annuus HOM05D000552 ORTHO05D000469 1.2e-06 57.4 156 37.2
Nitab4.5_0000934g0180 Nicotiana tabacum HOM05D000552 ORTHO05D000469 1.2e-06 57.4 150 34.7
Prupe.1G428000 Prunus persica HOM05D000552 ORTHO05D000469 1.2e-06 57.4 134 36.6
QL02p003109 Quercus lobata HOM05D000552 ORTHO05D000469 1.2e-06 57.4 144 34.7
QL03p022861 Quercus lobata HOM05D000552 ORTHO05D000469 1.2e-06 57.4 144 34.7
vmacro00097 Vaccinium macrocarpon HOM05D007367 ORTHO05D008866 1.2e-06 57.4 52 61.5
Actinidia10173 Actinidia chinensis HOM05D000552 ORTHO05D000469 1.6e-06 57.0 147 32.0
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 1.6e-06 57.0 89 40.4
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 1.6e-06 57.0 89 40.4
Aqoxy5G01128 Aquilegia oxysepala HOM05D000552 ORTHO05D000469 2.1e-06 56.6 145 37.9
arahy.Tifrunner.gnm1.ann1.95F752 Arachis hypogaea HOM05D000552 ORTHO05D000469 2.1e-06 56.6 56 50.0
BcaB07g33853 Brassica carinata HOM05D000552 ORTHO05D000469 2.1e-06 56.6 140 35.0
Peaxi162Scf00848g00318 Petunia axillaris HOM05D000552 ORTHO05D000469 2.1e-06 56.6 145 38.6
Sed0013176 Sechium edule HOM05D000552 ORTHO05D000469 2.1e-06 56.6 58 46.6
SGA_v2.0_scaffold28G11814 Striga asiatica HOM05D000552 ORTHO05D000469 2.1e-06 56.6 156 34.6
BcaC07g37234 Brassica carinata HOM05D000552 ORTHO05D000469 2.7e-06 56.2 139 36.0
C08p06550 Brassica napus HOM05D000552 ORTHO05D000469 2.7e-06 56.2 139 36.0
BolC8t47501H Brassica oleracea HOM05D000552 ORTHO05D000469 2.7e-06 56.2 139 36.0
Ca_13252_v3 Cicer arietinum L. HOM05D000552 ORTHO05D000469 2.7e-06 56.2 136 34.6
Eucgr.F00143 Eucalyptus grandis HOM05D000552 ORTHO05D000469 2.7e-06 56.2 36 69.4
Glyma.14G087100 Glycine max HOM05D000552 ORTHO05D000469 2.7e-06 56.2 61 49.2
Glyma.17G237200 Glycine max HOM05D000552 ORTHO05D000469 2.7e-06 56.2 123 35.8
Gohir.A05G206900 Gossypium hirsutum HOM05D000552 ORTHO05D000469 2.7e-06 56.2 36 72.2
THA.LOC104799792 Tarenaya hassleriana HOM05D000552 ORTHO05D000469 2.7e-06 56.2 36 69.4
arahy.Tifrunner.gnm1.ann1.XV8AS7 Arachis hypogaea HOM05D000552 ORTHO05D000469 3.6e-06 55.8 56 50.0
BcaB04g17545 Brassica carinata HOM05D000552 ORTHO05D000469 3.6e-06 55.8 139 33.1
BcaC08g42931 Brassica carinata HOM05D000552 ORTHO05D000469 3.6e-06 55.8 138 32.6
C06p01680 Brassica napus HOM05D000552 ORTHO05D000469 3.6e-06 55.8 138 32.6
BolC6t35299H Brassica oleracea HOM05D000552 ORTHO05D000469 3.6e-06 55.8 138 32.6
Cfa018033 Carpinus fangiana HOM05D000552 ORTHO05D000469 3.6e-06 55.8 153 32.0
CiPaw.16G034900 Carya illinoinensis HOM05D000552 ORTHO05D000469 3.6e-06 55.8 147 34.0
Haze_18091 Corylus avellana HOM05D000552 ORTHO05D000469 3.6e-06 55.8 148 35.1
CsaV3_2G026360 Cucumis sativus L. HOM05D000552 ORTHO05D000469 3.6e-06 55.8 152 34.9
MD15G1075100 Malus domestica HOM05D000552 ORTHO05D000469 3.6e-06 55.8 135 35.6
PGR083G2899 Punica granatum HOM05D000552 ORTHO05D000469 3.6e-06 55.8 32 81.2
Ah.11g042640 Amaranthus hybridus HOM05D000552 ORTHO05D000469 4.7e-06 55.5 58 44.8
AL1G53330 Arabidopsis lyrata HOM05D000552 ORTHO05D000469 4.7e-06 55.5 144 34.0
CAN.G1054.6 Capsicum annuum HOM05D000552 ORTHO05D000469 4.7e-06 55.5 132 38.6
Cfa018030 Carpinus fangiana HOM05D000552 ORTHO05D000469 4.7e-06 55.5 148 33.1
ClCG08G016260 Citrullus lanatus HOM05D000552 ORTHO05D000469 4.7e-06 55.5 157 34.4
A08p05920 Brassica napus HOM05D000552 ORTHO05D000469 6.1e-06 55.1 139 35.3
Carub.0001s3600 Capsella rubella HOM05D000552 ORTHO05D000469 6.1e-06 55.1 153 29.4
A10p06630 Brassica napus HOM05D000552 ORTHO05D000469 8.0e-06 54.7 139 33.8
BraA10t42918Z Brassica rapa HOM05D000552 ORTHO05D000469 8.0e-06 54.7 139 33.8
CSS0009473 Camellia sinensis var. sinensis HOM05D000552 ORTHO05D000469 8.0e-06 54.7 166 33.7
CiPaw.16G035000 Carya illinoinensis HOM05D000552 ORTHO05D000469 8.0e-06 54.7 152 35.5
ECA247G2828 Erigeron canadensis HOM05D000552 ORTHO05D000469 8.0e-06 54.7 36 69.4
Sc02g0009420 Simmondsia chinensis HOM05D000552 ORTHO05D000469 8.0e-06 54.7 75 44.0


User provided reference genes

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