Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.8e-301 1038.9 691 100.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.7e-222 775.4 705 79.6
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.0e-199 699.9 516 70.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 4.1e-197 692.2 463 77.8
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 5.5e-186 655.2 518 68.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.7e-182 643.7 514 68.7
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.8e-182 642.9 514 68.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 7.7e-180 634.8 493 69.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.9e-179 632.9 510 67.1
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.8e-177 626.3 504 66.1
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.1e-173 614.4 487 69.6
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.1e-173 614.4 478 68.0
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.4e-173 612.1 545 63.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 9.2e-173 611.3 502 66.5
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 7.8e-172 608.2 520 62.5
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 7.8e-172 608.2 505 65.9
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.0e-171 605.5 513 63.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 6.6e-171 605.1 496 66.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.9e-170 603.6 512 64.8
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 5.6e-170 602.1 493 64.9
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 5.6e-170 602.1 502 65.3
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 5.6e-170 602.1 517 64.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.6e-169 600.5 507 64.1
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.6e-169 599.4 513 63.5
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 6.1e-169 598.6 508 63.2
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 8.0e-169 598.2 521 63.5
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.8e-168 597.0 520 64.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 4.0e-168 595.9 518 62.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.0e-168 595.9 501 64.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 5.2e-168 595.5 520 64.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-167 594.3 512 65.2
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.2e-167 594.3 517 63.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.6e-167 593.2 408 72.3
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 2.6e-167 593.2 516 64.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 7.5e-167 591.7 518 62.9
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.9e-166 589.0 502 64.3
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.1e-165 587.8 502 64.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.2e-165 584.7 520 62.9
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-164 584.3 520 63.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-164 584.3 522 63.4
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.2e-164 584.3 555 59.6
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.6e-164 582.4 513 64.5
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 8.6e-163 578.2 503 63.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 8.6e-163 578.2 455 65.7
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.5e-162 577.4 512 64.1
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.9e-162 577.0 481 64.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.9e-162 577.0 447 68.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 2.5e-162 576.6 500 63.8
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.5e-162 576.6 514 62.1
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 3.3e-162 576.2 520 61.9
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.3e-162 575.9 453 66.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.2e-161 574.3 529 62.0
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.6e-161 573.9 522 62.6
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 2.1e-161 573.5 522 62.6
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.6e-161 572.8 495 64.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.7e-161 572.4 504 62.9
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.4e-160 570.9 518 60.8
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.9e-160 568.2 511 63.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.9e-160 568.2 511 63.0
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.9e-160 568.2 511 63.0
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.5e-159 565.1 521 60.8
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.7e-158 563.9 521 60.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.7e-158 563.9 501 62.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.3e-158 561.6 381 75.9
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-157 561.2 496 61.9
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 5.4e-157 558.9 518 60.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 9.2e-157 558.1 424 69.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.2e-156 557.8 452 65.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.2e-156 557.8 518 61.8
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.7e-156 556.6 516 60.3
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.3e-155 554.3 487 61.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.0e-155 553.1 493 61.3
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.5e-154 550.8 515 61.4
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.3e-154 549.7 526 61.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.3e-154 549.7 487 61.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.3e-154 549.3 410 67.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 5.6e-154 548.9 504 61.9
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.3e-154 548.5 447 66.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 9.5e-154 548.1 571 56.2
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.2e-151 541.2 508 62.2
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 5.8e-151 538.9 493 60.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.3e-150 537.7 522 59.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 8.3e-150 535.0 514 58.0
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.1e-148 530.4 522 57.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.1e-148 530.4 512 59.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.7e-148 530.0 485 59.8
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.9e-146 523.9 456 61.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.5e-146 523.5 421 64.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 5.6e-146 522.3 508 58.3
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.8e-144 517.3 451 61.4
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.0e-143 513.8 460 61.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.6e-143 513.5 518 57.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 3.4e-143 513.1 508 58.1
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 8.7e-139 498.4 519 56.6
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.3e-138 495.4 512 55.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.1e-136 490.0 514 56.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 6.9e-136 488.8 516 56.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 5.8e-135 485.7 431 59.2
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.2e-134 483.8 440 58.4
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.2e-134 483.8 493 57.0
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 4.2e-133 479.6 370 70.0
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 9.3e-133 478.4 369 64.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-132 476.1 396 64.4
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 7.3e-130 468.8 458 55.9
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 8.1e-129 465.3 517 54.7
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 9.0e-128 461.8 539 51.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 8.4e-126 455.3 495 54.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 3.9e-123 446.4 399 58.4
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.0e-119 434.1 508 52.2
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.5e-114 417.2 413 53.8
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.3e-110 404.8 446 53.6
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 6.5e-110 402.5 342 65.5
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 4.1e-104 383.3 284 67.6
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.6e-103 380.6 325 58.8
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 7.7e-103 379.0 493 48.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.0e-99 367.1 350 56.6
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 8.2e-97 359.0 370 54.3
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.1e-96 358.6 423 49.2
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.0e-94 352.1 416 47.4
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-82 311.6 217 71.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.4e-82 310.1 435 46.7
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.7e-82 308.9 365 50.4
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.5e-79 300.4 301 60.1
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.0e-70 272.3 379 43.5
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 9.4e-69 265.8 238 65.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-68 265.4 493 39.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.5e-66 258.5 177 73.4
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 7.2e-61 239.6 548 33.0
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-60 238.8 212 60.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 8.9e-59 232.6 400 40.2
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-45 188.7 171 57.3
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 8.9e-43 179.5 196 50.0
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 9.5e-37 159.5 178 55.1
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.9e-33 147.9 215 42.3
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 3.0e-30 137.9 122 63.9
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 5.2e-27 127.1 94 64.9
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 9.3e-24 116.3 95 57.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.2e-23 115.9 87 66.7
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.7e-23 114.8 95 56.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.3e-21 107.5 390 27.9
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-19 102.4 122 60.7
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 9.0e-19 99.8 122 50.0
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 7.6e-18 96.7 352 27.3
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.9e-17 94.0 90 65.6
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 3.0e-14 84.7 105 46.7
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 2.0e-10 72.0 140 34.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.8e-10 70.5 163 33.1
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.9e-09 68.2 106 41.5
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.4e-09 67.0 126 38.1
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.4e-08 65.1 58 62.1
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 7.1e-08 63.5 44 63.6
Sopen03g039830 Solanum pennellii HOM05D022075 ORTHO05D030648 6.7e-06 57.0 93 44.1


User provided reference genes

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