Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 9.4e-110 400.2 203 100.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.0e-96 355.9 203 90.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.9e-74 282.3 203 70.4
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.3e-71 273.5 201 69.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.6e-69 266.5 203 64.5
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.4e-65 252.7 203 64.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.4e-65 251.5 192 63.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.8e-64 247.7 192 63.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.9e-63 245.4 193 62.2
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-62 243.0 192 62.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.3e-62 242.3 192 62.0
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.8e-61 239.2 201 58.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.7e-61 238.4 201 60.2
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-60 236.1 188 60.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.4e-60 236.1 193 61.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 8.9e-60 234.2 193 61.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.9e-60 234.2 191 58.6
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.0e-59 233.0 191 60.2
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.4e-59 232.3 201 55.2
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.4e-59 232.3 194 58.2
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.8e-59 231.5 203 57.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 5.8e-59 231.5 192 58.9
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 7.6e-59 231.1 193 60.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 9.9e-59 230.7 191 58.1
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.7e-58 229.9 201 57.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.2e-58 229.6 193 57.5
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.9e-58 229.2 191 59.2
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.4e-58 228.0 191 57.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.4e-58 228.0 201 56.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-57 227.3 197 59.9
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.4e-57 226.9 194 58.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-57 226.9 192 59.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-57 226.9 197 57.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.9e-57 226.5 191 59.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.2e-56 223.8 198 54.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.6e-56 223.4 203 57.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-56 223.4 191 57.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-56 222.6 192 57.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.5e-56 222.2 196 57.7
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.6e-56 221.9 194 58.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.6e-56 221.9 201 55.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.0e-56 221.5 174 63.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 6.0e-56 221.5 189 59.3
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 7.8e-56 221.1 189 57.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 7.8e-56 221.1 201 54.7
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.0e-55 220.7 195 56.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-55 220.7 201 56.2
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.3e-55 220.3 195 54.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-55 219.9 191 57.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.9e-55 218.8 185 55.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 6.6e-55 218.0 191 57.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.6e-55 218.0 185 54.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 4.3e-54 215.3 196 54.6
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.3e-54 215.3 201 55.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.3e-54 214.5 201 54.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.3e-54 214.5 192 57.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.6e-54 214.2 192 56.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 52.8
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-53 213.0 185 53.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.1e-53 213.0 181 54.7
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.8e-53 212.6 192 55.7
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.8e-53 211.8 192 54.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 6.2e-53 211.5 193 56.5
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.1e-53 211.1 192 54.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.1e-53 211.1 196 55.6
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.1e-52 210.7 195 51.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.8e-52 209.9 196 53.1
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.8e-52 209.9 193 53.9
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.8e-52 209.9 197 56.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.1e-52 209.1 189 51.9
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.0e-52 208.8 196 53.6
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.0e-52 208.8 197 55.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.3e-52 208.4 201 53.7
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.2e-51 207.2 196 54.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-51 207.2 197 55.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.6e-51 206.1 196 54.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.4e-51 205.7 197 54.8
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 192 56.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 5.8e-51 204.9 195 55.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.8e-51 204.9 196 54.1
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 7.6e-51 204.5 187 52.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.3e-50 203.8 196 51.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.7e-50 203.4 188 53.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-50 203.4 195 55.4
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.2e-50 203.0 188 54.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.8e-50 202.2 143 66.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-50 201.8 195 55.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.9e-50 201.8 191 54.5
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 6.4e-50 201.4 201 51.2
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.4e-50 201.4 197 51.3
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.4e-50 201.4 192 54.7
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.4e-50 201.4 197 51.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 8.4e-50 201.1 192 50.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-49 200.3 204 51.0
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.4e-49 200.3 196 54.1
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-49 199.9 195 55.4
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.9e-49 199.9 193 54.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 195 55.4
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.2e-49 199.1 190 51.6
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-49 199.1 195 54.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-49 199.1 196 55.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.2e-49 198.7 201 52.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.2e-49 198.7 201 50.7
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.4e-49 198.4 239 44.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 5.4e-49 198.4 196 51.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.2e-48 197.2 192 52.1
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.6e-48 196.8 202 49.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.1e-48 196.4 196 51.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.7e-48 196.1 194 53.1
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.7e-48 196.1 199 53.8
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 3.5e-48 195.7 192 49.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.5e-48 195.7 193 48.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.6e-48 195.3 198 51.5
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.9e-48 194.5 202 51.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.0e-47 194.1 192 49.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-47 193.4 195 54.4
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.9e-47 192.2 175 58.3
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 5.1e-47 191.8 192 49.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 5.1e-47 191.8 195 53.8
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.1e-47 191.8 189 50.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.6e-47 191.4 205 50.2
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 192 49.0
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.5e-46 190.3 197 48.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.5e-46 190.3 186 53.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.5e-46 189.5 192 53.1
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 7.3e-46 188.0 197 50.3
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.3e-45 187.2 197 47.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.6e-45 185.7 179 53.1
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.8e-45 185.3 197 48.2
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 8.1e-45 184.5 170 54.1
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 8.1e-45 184.5 194 46.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.4e-44 183.7 203 49.3
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.4e-44 183.7 142 62.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.4e-44 183.7 181 53.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.1e-44 182.6 204 49.0
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.4e-42 174.9 173 54.9
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 8.4e-42 174.5 192 47.9
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-41 174.1 191 48.7
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 5.5e-41 171.8 191 48.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.6e-40 168.7 192 45.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.0e-40 168.3 136 60.3
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-39 167.5 202 44.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.3e-39 167.2 164 54.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.7e-39 164.5 202 43.6
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.1e-38 164.1 143 51.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-37 160.6 157 52.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.1e-37 159.8 192 44.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.7e-37 159.1 190 41.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.7e-37 159.1 199 41.2
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 5.3e-36 155.2 192 44.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-35 152.5 163 49.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 6.5e-34 148.3 203 40.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.2e-33 145.6 193 44.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.2e-33 145.6 203 39.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.1e-33 144.8 127 53.5
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-32 144.1 156 48.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.3e-31 139.8 149 48.3
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.9e-31 139.0 201 39.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.3e-30 136.0 199 41.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.4e-30 134.8 154 45.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-29 133.7 130 51.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.8e-26 122.5 150 44.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 9.3e-25 117.9 113 52.2
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.7e-22 107.8 194 34.5
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 3.7e-21 105.9 108 51.9
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-17 94.4 84 58.3
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.2e-17 91.7 189 31.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-14 83.6 192 32.8
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.5e-14 83.2 184 35.9
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.1e-12 76.3 201 26.9
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-12 76.3 105 42.9
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.1e-12 76.3 166 33.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.9e-12 75.1 76 50.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.3e-10 70.9 163 30.7
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 8.5e-10 68.2 197 26.9
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.1e-09 67.8 159 31.4


User provided reference genes

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