Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 8.0e-153 543.9 308 100.0
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 3.1e-120 435.6 308 75.6
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.5e-119 433.3 308 77.3
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 1.5e-114 416.8 314 76.4
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 2.8e-113 412.5 308 72.7
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.0e-111 406.4 308 72.1
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 6.4e-110 401.4 312 71.5
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 3.2e-109 399.1 315 70.5
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 5.6e-106 388.3 312 67.3
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 2.0e-103 379.8 311 68.5
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 2.9e-102 375.9 308 67.2
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 3.8e-102 375.6 313 65.2
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 3.8e-102 375.6 306 68.3
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 1.1e-101 374.0 314 65.6
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.9e-101 373.2 308 68.5
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 5.4e-101 371.7 313 65.5
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.6e-100 370.2 310 68.4
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.6e-100 370.2 304 66.8
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 2.1e-100 369.8 312 67.3
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 2.7e-100 369.4 311 66.2
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 6.0e-100 368.2 312 64.4
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 1.8e-99 366.7 308 63.6
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 2.3e-99 366.3 311 65.0
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 5.1e-99 365.2 301 68.8
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 6.7e-99 364.8 308 64.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.5e-98 363.6 318 64.2
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.5e-98 363.6 304 68.4
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.9e-98 363.2 310 67.7
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 2.5e-98 362.8 318 64.2
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 4.3e-98 362.1 291 68.4
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 4.3e-98 362.1 285 69.1
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.3e-97 360.5 308 63.3
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 1.6e-97 360.1 286 69.2
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.6e-97 360.1 311 63.0
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 6.2e-97 358.2 311 63.0
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.1e-96 357.5 308 62.7
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 2.4e-96 356.3 318 65.4
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 3.1e-96 355.9 309 63.8
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 1.5e-95 353.6 315 61.9
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 2.0e-95 353.2 315 62.2
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 3.4e-95 352.4 308 65.3
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 4.5e-95 352.1 310 63.5
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 4.5e-95 352.1 309 63.4
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 1.7e-94 350.1 314 63.7
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.8e-94 349.0 310 61.9
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 3.8e-94 349.0 308 62.3
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 6.4e-94 348.2 310 63.2
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 1.4e-93 347.1 311 62.7
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 2.4e-93 346.3 311 65.9
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.7e-92 342.8 307 65.1
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 1.3e-91 340.5 310 61.9
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 3.9e-91 339.0 311 61.1
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 5.1e-91 338.6 308 61.0
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 1.9e-90 336.7 313 61.0
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 4.3e-90 335.5 278 67.6
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 2.1e-89 333.2 313 62.0
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 2.8e-89 332.8 311 61.7
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 3.7e-89 332.4 316 62.3
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 3.7e-89 332.4 311 61.7
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 4.8e-89 332.0 315 61.6
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 1.4e-88 330.5 279 63.4
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 2.4e-88 329.7 312 59.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.1e-88 329.3 279 63.4
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 4.0e-88 328.9 312 59.0
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 4.0e-88 328.9 308 60.1
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 9.0e-88 327.8 302 59.3
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 1.7e-86 323.6 311 58.2
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 2.9e-86 322.8 309 59.5
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 9.3e-85 317.8 311 61.1
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.6e-84 317.0 310 58.4
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 2.1e-84 316.6 310 58.1
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 7.9e-84 314.7 310 58.7
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 7.9e-84 314.7 310 58.7
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 1.0e-83 314.3 308 58.4
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.0e-83 314.3 310 58.4
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 1.3e-83 313.9 308 56.8
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.1e-82 310.8 313 57.8
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 7.4e-82 308.1 315 57.8
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.3e-81 307.4 309 57.0
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 3.7e-81 305.8 314 56.4
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 3.1e-80 302.8 279 62.4
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 3.4e-79 299.3 308 55.5
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 4.5e-79 298.9 313 55.9
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.2e-78 296.6 303 58.1
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 1.2e-76 290.8 308 55.2
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 4.6e-76 288.9 308 52.6
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.2e-71 274.2 307 53.7
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 2.6e-71 273.1 313 52.4
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 4.5e-71 272.3 317 52.1
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 2.5e-69 266.5 310 50.6
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 7.2e-69 265.0 311 52.4
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 4.7e-68 262.3 312 52.2
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 7.7e-63 245.0 309 48.5
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 2.6e-58 229.9 166 73.5
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.2e-50 204.5 255 53.3
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 2.2e-46 190.3 325 44.0
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 8.0e-44 181.8 297 40.7
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 4.0e-43 179.5 176 57.4
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 2.0e-42 177.2 163 63.2
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 8.3e-41 171.8 285 37.5
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 7.7e-39 165.2 125 68.8
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 9.5e-37 158.3 293 34.8
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.1e-36 155.6 287 35.2
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 2.2e-33 147.1 290 37.2
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 7.8e-31 138.7 185 49.7
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 4.4e-26 122.9 138 53.6
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 7.0e-24 115.5 181 40.3
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.3e-19 100.5 277 28.5
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 3.7e-17 93.2 205 36.1
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.4e-17 92.4 223 31.8
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.6e-15 87.8 262 30.2
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 1.6e-15 87.8 261 29.5
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 3.5e-15 86.7 263 28.5
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.0e-14 85.1 280 26.8
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 3.9e-14 83.2 248 27.4
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 5.1e-14 82.8 265 24.5
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 5.1e-14 82.8 71 59.2
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 5.1e-14 82.8 270 29.6
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 1.5e-13 81.3 280 28.9
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 1.5e-13 81.3 289 27.0
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.9e-13 80.9 263 27.8
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.5e-13 80.5 279 27.6
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 3.3e-13 80.1 265 25.7
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 4.3e-13 79.7 279 27.2
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 4.3e-13 79.7 279 27.6
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 7.3e-13 79.0 282 24.5
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 7.3e-13 79.0 278 26.3
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 2.1e-12 77.4 261 26.1
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 4.7e-12 76.3 278 24.5
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 6.2e-12 75.9 135 34.1
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 8.1e-12 75.5 261 26.4
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 1.1e-11 75.1 260 25.8
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.1e-11 75.1 261 23.4
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 1.4e-11 74.7 276 27.5
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 2.3e-11 73.9 278 23.4
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 2.3e-11 73.9 278 24.8
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.3e-11 73.9 287 25.1
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.1e-11 73.6 302 24.2
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 4.0e-11 73.2 302 23.8
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 5.2e-11 72.8 261 27.6
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 5.2e-11 72.8 178 30.3
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 5.2e-11 72.8 297 24.9
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 8.9e-11 72.0 273 24.2
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 1.5e-10 71.2 251 25.5
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.5e-10 71.2 183 26.2
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.5e-10 71.2 285 24.2
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 2.0e-10 70.9 155 29.7
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.0e-10 70.9 263 25.1
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 2.6e-10 70.5 284 25.4
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 3.4e-10 70.1 285 24.2
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 4.4e-10 69.7 111 33.3
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 5.8e-10 69.3 283 23.0
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 5.8e-10 69.3 302 23.8
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 1.3e-09 68.2 253 26.1
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 1.7e-09 67.8 278 24.5
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 2.9e-09 67.0 102 34.3
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 8.3e-09 65.5 261 23.0
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 1.1e-08 65.1 279 23.3
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 1.1e-08 65.1 113 31.9
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.1e-08 65.1 246 27.2
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 2.4e-08 63.9 280 23.6
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 2.4e-08 63.9 283 24.4
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 3.2e-08 63.5 280 23.9
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 4.1e-08 63.2 258 23.3
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 5.4e-08 62.8 271 24.0
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 5.4e-08 62.8 281 25.6
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 5.4e-08 62.8 164 31.7
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 7.1e-08 62.4 261 24.5
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 2.7e-07 60.5 222 22.1
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 6.0e-07 59.3 262 23.7
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.8e-07 58.9 111 32.4
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.8e-07 58.9 111 32.4
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.3e-06 58.2 242 24.0
PSO135G0199 Papaver somniferum HOM05D001193 ORTHO05D001016 1.7e-06 57.8 213 27.7
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 3.0e-06 57.0 93 36.6
Phvul.003G272800 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 6.6e-06 55.8 291 24.4
SEGI_08849 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 6.6e-06 55.8 283 23.3
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 8.6e-06 55.5 279 24.0
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 8.6e-06 55.5 247 25.1
Sopen08g024620 Solanum pennellii HOM05D001193 ORTHO05D001016 8.6e-06 55.5 254 28.0


User provided reference genes

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