Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 0.0e+00 1896.7 976 100.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 0.0e+00 1115.5 993 61.8
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 0.0e+00 1105.9 913 65.8
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.3e-297 1026.5 953 60.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 8.1e-276 954.1 914 58.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.5e-274 949.9 922 56.8
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.6e-274 949.1 918 56.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 5.8e-274 948.0 979 57.1
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.2e-272 941.8 920 56.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.3e-269 931.8 969 53.9
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.4e-259 899.4 941 53.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.4e-256 890.2 920 53.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.7e-253 878.2 794 58.8
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 9.7e-253 877.5 918 53.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 4.1e-251 872.1 958 52.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.3e-251 871.7 921 54.7
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.2e-249 866.3 918 52.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.2e-249 866.3 917 52.7
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.1e-247 859.8 951 51.2
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-244 850.5 926 52.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.4e-243 847.0 953 51.4
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 7.0e-243 844.7 920 52.4
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.6e-242 842.8 919 52.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.6e-242 842.8 958 51.5
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 3.5e-242 842.4 873 55.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 3.2e-240 835.9 915 51.4
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-237 827.4 918 51.4
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 7.4e-237 824.7 950 51.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 9.7e-237 824.3 923 51.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.2e-236 823.2 975 49.5
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.7e-236 822.4 948 50.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.4e-235 820.5 925 49.5
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.3e-235 818.5 920 48.9
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 5.3e-235 818.5 951 49.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 7.0e-235 818.1 953 50.2
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.3e-233 813.9 924 50.8
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.9e-233 812.8 947 49.8
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 9.4e-232 807.7 917 49.5
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.0e-229 800.0 921 50.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.4e-229 798.9 917 49.9
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.1e-227 794.3 912 49.2
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 7.0e-227 791.6 959 48.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 7.0e-227 791.6 947 49.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 3.5e-226 789.3 907 48.3
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-225 786.9 907 48.2
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.1e-224 784.3 901 48.6
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.5e-224 783.1 882 49.5
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.2e-224 782.3 984 47.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-222 776.5 924 47.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 3.0e-222 776.2 971 46.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.8e-222 775.0 907 47.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.4e-221 772.7 942 48.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.8e-220 769.6 881 48.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 4.8e-220 768.8 887 49.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 8.3e-220 768.1 920 48.3
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.4e-219 765.4 882 48.5
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.1e-219 764.6 907 47.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 4.2e-216 755.7 938 46.8
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.2e-215 754.2 881 49.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.0e-214 751.1 907 47.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 4.0e-214 749.2 922 47.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.6e-213 746.5 915 46.1
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.3e-209 734.2 948 44.8
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.9e-209 733.0 904 46.8
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.9e-203 713.8 918 49.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.4e-203 712.2 909 44.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.8e-198 697.2 934 45.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.8e-198 697.2 862 47.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.2e-198 695.7 884 44.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.8e-197 691.4 914 43.4
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 3.7e-196 689.5 911 44.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.6e-193 678.7 1383 35.2
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-191 674.5 885 44.2
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.8e-190 670.6 811 48.1
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.1e-190 669.8 886 44.0
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.4e-189 666.0 900 44.7
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.4e-188 662.1 900 45.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 9.2e-187 658.3 923 43.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-185 654.4 900 44.6
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.0e-185 653.3 885 45.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.1e-184 651.4 885 42.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-178 631.3 892 43.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 7.3e-176 622.1 912 41.9
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-171 608.2 793 46.8
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.7e-170 603.6 904 42.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.7e-170 603.6 904 42.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 5.1e-169 599.4 897 41.9
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 6.6e-169 599.0 905 41.8
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 8.7e-169 598.6 905 41.7
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 8.7e-169 598.6 869 41.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.5e-168 597.0 950 41.9
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 6.2e-167 592.4 942 40.7
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.1e-166 590.1 890 41.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 4.0e-166 589.7 953 40.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.4e-165 586.6 890 41.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.9e-165 585.1 897 41.6
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.9e-164 583.6 899 41.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 3.8e-164 583.2 897 40.4
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-163 579.7 950 39.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.7e-162 577.0 1376 32.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.0e-161 573.5 936 39.1
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-156 557.4 713 46.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.6e-154 551.2 884 40.0
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.0e-154 549.3 890 40.6
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 7.9e-154 548.9 961 38.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.5e-152 543.9 948 38.4
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.2e-148 530.8 932 37.3
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 5.0e-148 529.6 758 42.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.1e-146 522.7 519 53.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.3e-135 486.1 944 37.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.2e-133 481.9 462 56.9
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-131 474.9 962 35.8
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.4e-126 457.6 408 58.6
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.5e-125 453.4 585 47.9
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.6e-112 411.0 487 48.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.3e-108 398.7 330 61.8
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.7e-106 391.0 690 38.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 6.8e-105 386.3 322 62.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 9.8e-96 355.9 363 54.3
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 7.0e-94 349.7 818 31.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.5e-93 347.4 426 47.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 2.9e-87 327.8 306 55.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.4e-86 324.7 423 43.3
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 9.5e-83 312.8 1126 26.1
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.2e-81 307.0 841 30.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-78 299.3 491 38.7
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-78 298.1 444 39.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.1e-76 290.4 395 42.8
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-75 288.9 280 55.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.5e-75 288.1 463 41.7
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.3e-75 287.3 455 42.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 7.3e-75 286.6 431 41.3
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.4e-70 272.3 560 34.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 5.6e-67 260.4 281 53.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.6e-66 258.8 198 63.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.1e-66 256.5 654 31.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.4e-62 245.7 261 51.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-61 241.5 508 32.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 4.3e-59 234.2 340 42.4
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 5.6e-59 233.8 250 49.2
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.3e-57 227.3 178 63.5
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.8e-50 204.1 348 37.1
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 3.1e-49 201.4 185 58.9
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.0e-45 187.2 337 36.5
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.0e-45 187.2 467 31.9
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-44 185.3 387 32.3
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.8e-41 175.6 135 63.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 7.1e-38 163.7 362 33.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.1e-35 156.4 119 62.2
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.1e-33 147.9 103 67.0
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.3e-33 147.5 160 50.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.2e-31 142.1 278 33.1
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 7.9e-29 133.7 239 42.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-28 132.9 85 75.3
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.3e-28 132.1 183 44.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 6.7e-28 130.6 125 53.6
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.5e-27 129.4 209 39.2
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 3.3e-27 128.3 86 68.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.0e-25 120.2 84 65.5
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.0e-24 119.0 81 69.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 4.5e-24 117.9 212 39.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 2.9e-23 115.2 80 70.0
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 1.4e-22 112.8 154 44.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.5e-22 110.9 146 45.2
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.8e-20 105.9 121 47.1
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 4.3e-19 101.3 87 56.3
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.2e-18 99.0 165 35.2
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.1e-17 94.7 166 41.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.1e-17 94.7 135 45.9
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 3.4e-16 91.7 193 31.1
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.3e-12 79.0 58 63.8
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.1e-12 77.8 924 21.0
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.4e-11 74.7 115 37.4
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 1.7e-10 72.8 79 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.8e-10 71.2 96 39.6
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 8.2e-10 70.5 90 42.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.5e-08 65.1 44 65.9
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 3.8e-07 61.6 83 37.3


User provided reference genes

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