Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.2e-253 879.4 447 100.0
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 5.2e-161 571.6 370 76.8
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 4.1e-158 562.0 365 76.7
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 7.0e-158 561.2 365 76.7
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 8.9e-153 544.3 370 73.2
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 2.1e-149 533.1 421 66.0
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 5.6e-139 498.4 371 67.9
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 3.4e-128 462.6 361 66.2
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.2e-127 459.9 369 65.3
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.1e-126 457.6 369 65.0
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.9e-126 456.8 369 65.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 3.5e-125 452.6 362 64.6
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 6.9e-121 438.3 366 60.7
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 1.5e-120 437.2 366 60.7
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.3e-119 434.1 367 61.0
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.2e-119 433.3 366 62.3
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 2.9e-119 433.0 362 61.3
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 6.4e-119 431.8 366 62.0
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 6.4e-119 431.8 354 61.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 5.4e-118 428.7 365 60.3
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.4e-113 414.1 357 59.4
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 9.9e-112 407.9 358 58.9
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 4.9e-111 405.6 367 59.7
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 4.6e-109 399.1 355 57.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 1.0e-108 397.9 369 58.0
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.1e-107 394.4 345 62.0
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.5e-107 394.0 354 57.9
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 2.5e-107 393.3 349 58.5
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.3e-106 391.0 364 59.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.1e-106 390.2 354 57.9
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.8e-106 389.8 345 62.0
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 4.8e-106 389.0 344 62.2
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 4.8e-106 389.0 367 55.6
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-105 386.3 358 55.9
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.9e-105 385.2 354 57.3
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 9.0e-105 384.8 343 60.1
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.5e-104 384.0 347 58.8
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 3.4e-104 382.9 352 56.2
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 3.4e-104 382.9 354 56.8
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 4.5e-104 382.5 379 54.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 5.8e-104 382.1 360 56.7
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.0e-103 381.3 360 56.4
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.2e-103 380.2 360 56.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 2.2e-103 380.2 360 56.9
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 4.9e-103 379.0 346 60.1
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 1.9e-102 377.1 257 74.7
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.8e-100 370.5 458 48.0
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.3e-100 370.2 354 55.9
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 1.9e-99 367.1 418 50.7
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 2.5e-99 366.7 327 59.3
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.3e-98 364.4 358 57.3
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.6e-98 364.0 377 53.8
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.7e-98 362.8 314 60.5
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.4e-97 360.9 354 54.8
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.4e-97 360.1 369 56.1
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 2.4e-97 360.1 354 55.9
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 2.6e-96 356.7 358 53.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 3.4e-96 356.3 354 54.2
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 5.9e-96 355.5 362 52.8
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 5.9e-96 355.5 360 54.2
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.3e-95 354.4 353 50.7
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 7.2e-94 348.6 331 57.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.1e-91 341.3 358 50.6
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 3.3e-91 339.7 357 51.5
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.8e-90 336.7 361 51.5
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.8e-90 336.7 378 51.1
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.4e-88 329.7 332 55.7
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 5.0e-87 325.9 361 50.7
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 8.5e-87 325.1 393 46.8
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 8.5e-87 325.1 372 50.0
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 3.6e-85 319.7 436 43.8
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.4e-84 317.8 451 42.8
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 2.3e-84 317.0 448 42.6
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 6.7e-84 315.5 355 45.6
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.6e-83 313.5 457 42.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 3.3e-83 313.2 357 49.9
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.4e-83 312.0 351 50.4
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 9.7e-83 311.6 358 48.3
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 8.2e-82 308.5 275 59.3
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.2e-82 308.5 368 45.7
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.4e-81 307.8 357 45.4
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.8e-81 307.4 366 47.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.4e-81 307.0 353 47.0
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 9.1e-81 305.1 365 46.0
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.2e-80 304.7 351 51.3
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.2e-79 300.4 353 47.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 8.5e-79 298.5 363 47.7
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 8.5e-79 298.5 363 47.7
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.1e-78 298.1 362 47.5
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.5e-78 297.7 338 49.1
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.9e-78 297.4 358 45.3
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.2e-78 296.2 354 49.4
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 9.4e-78 295.0 356 44.4
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 2.7e-77 293.5 366 48.4
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 3.6e-77 293.1 361 47.6
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.1e-75 288.1 358 44.1
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.3e-75 286.6 404 43.6
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.3e-75 286.6 404 43.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.4e-75 286.2 362 47.8
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.4e-75 285.4 362 44.8
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-74 284.6 358 44.7
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 8.2e-74 282.0 376 44.7
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 8.2e-74 282.0 372 46.2
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.8e-73 280.8 319 52.0
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.4e-73 280.4 379 45.6
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.1e-73 280.0 379 45.1
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.1e-73 280.0 379 45.1
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.3e-73 279.3 379 45.4
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.1e-73 278.5 380 45.3
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 9.1e-73 278.5 376 44.9
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.6e-72 277.7 360 46.1
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.0e-72 277.3 339 48.4
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.6e-72 276.9 383 44.4
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 3.5e-72 276.6 348 44.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-72 276.6 348 44.0
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.5e-72 276.6 348 44.0
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 4.5e-72 276.2 351 44.2
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 4.5e-72 276.2 358 46.6
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 4.2e-70 269.6 349 43.6
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 7.2e-70 268.9 349 43.6
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.2e-69 268.1 340 43.2
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.6e-69 267.7 255 57.3
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.7e-69 266.9 347 45.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 6.1e-69 265.8 366 44.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 4.0e-68 263.1 340 43.8
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 2.0e-64 250.8 340 42.9
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 3.5e-64 250.0 281 50.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 4.5e-64 249.6 381 40.9
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.5e-62 243.8 360 41.4
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-61 241.1 360 39.2
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 1.6e-61 241.1 320 42.5
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.0e-60 238.4 356 39.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.4e-60 238.0 356 41.0
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.3e-60 237.3 363 39.9
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.3e-60 237.3 345 43.2
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 6.8e-60 235.7 360 39.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.0e-59 234.2 352 40.3
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 2.4e-57 227.3 347 39.8
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.9e-55 220.3 352 38.9
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.5e-54 217.2 378 37.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 6.1e-53 212.6 326 40.5
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.4e-52 211.5 375 37.6
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.5e-51 208.0 184 56.0
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.4e-51 206.5 307 42.0
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.7e-50 203.4 182 58.8
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 3.7e-50 203.4 353 36.8
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.1e-49 199.9 379 35.4
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.2e-48 198.4 172 57.0
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-48 198.0 380 35.3
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-48 198.0 380 35.3
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 7.8e-48 195.7 308 38.6
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 3.3e-46 190.3 320 38.4
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 2.8e-45 187.2 369 33.9
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 2.6e-43 180.6 180 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 4.9e-42 176.4 376 32.7
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.3e-42 175.6 168 55.4
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 9.2e-41 172.2 367 34.1
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.9e-30 137.9 342 31.6
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 2.5e-30 137.5 207 41.5
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.2e-25 120.6 198 38.4
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 5.4e-25 119.8 186 39.8
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.6e-24 116.7 117 55.6
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 7.3e-22 109.4 105 54.3
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.2e-21 108.6 139 47.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 6.2e-21 106.3 352 26.4
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-20 105.1 182 37.4
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 3.8e-18 97.1 81 54.3
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 2.3e-15 87.8 77 54.5
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 2.1e-13 81.3 87 49.4
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.4e-11 73.9 249 26.5
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.6e-11 72.8 180 32.2
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 6.0e-08 63.2 68 50.0
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 1.7e-07 61.6 69 52.2
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.9e-07 60.5 340 22.6
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 5.1e-07 60.1 56 57.1
SalBow8G1240 Salvia bowleyana HOM05D003082 ORTHO05D003497 9.6e-06 55.8 32 81.2


User provided reference genes

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